RNA id: TU302666


Basic Information

Item Value
RNA id TU302666
length 559
lncRNA type read_through
GC content 0.67
exon number 2
gene id rreb1a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27515960 ~ 27625569 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTGCAGTCCGGCTGGCGGCTGTGCAGAGCAGCAGGAGACAGAAAGCGCAGAGCAGCATCCGGACCTGCAGGGGGcgccagagaccagagcagcacccagcagcagcaccaaGGTCGAGAGCGCCGACGACGACGACTGCCACAGCAACAAAAGCCTGGACCTCAACTTCGGCAAAAAGCTGATCGACTTCAAGCTCTCGGCATCCTCGGGCCCCGCCCAGGAAGAACAGCCTGCGTCCTCttcctcgtcctcctcttcctcgtcgTCCTCGACCTCTGCTCCGCACGCGGCGACGGAGAGCCCGGAGAAGGAGAAACGCGCCCCAAACTCCTCCTCCGGCAGCGCGGCGGCGGCGGCCAAGCAGCAGCCCGAGTACAAGCACGTGTGCCGAGTGTGCAAGAAGAGCTTCCGTTACGCCACCACGCTCGCTCGCCACGAGCGGGCGCACCTCTCCGAGGAGACGCCAACGCCGGCGGCCGAGGAGGAGAACCCGCCGGCGAAAGACGAGGCGGCGTCTGAGAGCGCCGCCTCTGCCGCCGCGGTCGCCAAACCGACAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302664 lncRNA downstream 3601 27516861 ~ 27520982 (-) False rreb1a
TU302663 lncRNA downstream 8205 27515960 ~ 27516378 (-) False rreb1a
TU302669 lncRNA downstream 10771 27511954 ~ 27513812 (-) False LOC120552569
TU302568 lncRNA downstream 41422 27477266 ~ 27483161 (-) False G223538
TU302674 lncRNA upstream 2961 27528400 ~ 27584765 (-) True G223608
TU302675 lncRNA upstream 7304 27532743 ~ 27592465 (-) True G223609
TU302682 lncRNA upstream 22806 27548245 ~ 27548734 (-) True G223613
TU302671 lncRNA upstream 36297 27561736 ~ 27579199 (-) False G223607
TU302676 lncRNA upstream 36435 27561874 ~ 27592465 (-) False G223609
XM_039790740.1 mRNA downstream 9657 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA downstream 10756 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA downstream 20393 27490169 ~ 27504190 (-) False LOC120552569
XM_039790775.1 mRNA downstream 212218 27310012 ~ 27312365 (-) True LOC120552593
XM_039790772.1 mRNA downstream 299591 27223754 ~ 27224992 (-) True LOC120552591
XM_039790778.1 mRNA upstream 168901 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA upstream 168901 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA upstream 168901 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA upstream 169101 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA upstream 170399 27695838 ~ 27700331 (-) False LOC120552596
TU302573 other downstream 41422 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 336365 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 1014456 26484235 ~ 26510127 (-) False LOC120552560
TU302721 other upstream 115125 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 153976 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 169415 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 213343 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 225266 27750705 ~ 27754334 (-) True G223665

Expression Profile