RNA id: TU302669


Basic Information

Item Value
RNA id TU302669
length 1211
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC120552569
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27258373 ~ 28498012 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCAGACAGTTTAGACTCCATTTTGAGTCGGCAGaacagagcaggaggaggaaaacTGAAGGCTGAGGCAGGACTGACTTCAGATCAGAAGATGAGTGatgtggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCTGTCTATGAAGAGTGACCGGTCCAAAGGTCTTCCTCTAGAGTTCAGTAATGAACCTAGACGCTCAGACACAAGGCAATAAAACTGCTGAATAgaatttggacacaccttctcattcaatgtgtttctttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcctcaaagtagccaccgtttgctttttttgataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttaccttcacaggtgtgctttgtcagggttaattagtggaagtttttcccttaataatggggttgggaccatcagttgtgttgtgcataagtcaggttgatacacagccgacagccctattggacaactgttagaattcatattatggcaagaaccaatgttaggttgtaaaaagataaaactatgcttatgtattatgttttaaataataaattgtatgctgcagtCAGGTAATGAAAATAGGAATGGAATCTAGAATGACTAGCCTACTAACTAAAAACAGCTGgttatttctctccccctctcttcctgtctttggttaaattgattaggttaaaaccaactattaacatATGAAGAGGAATATCTCTTTGAGTCTCCAACCTCCTGGTGCCAAGTctgggttagaacaaaggaaatgcaaactctgtaaacttgaatataatcaacacttccatgataatcaaccttagtctgtgacctggagtagaCCTAAATtaagaggtgtgtccttatcctgagaAAAGAGGAATAAATTTGGGAGCAGGAGAAGGATTCGAGGCCACAAGCCTTGGACCCGACAAGGGAACAGGTTCTGTGGTCCGCTGGttgcagtgtattgttttgtcatgttgcATGGCTGCTGACTGTCTTATGTGACTCCGCAAGGAGAGCATGAgatcagtccgctgtcagctgcagtgtaacatttgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302571 lncRNA downstream 28793 27157973 ~ 27483161 (-) False G223538
TU302568 lncRNA downstream 28793 27477266 ~ 27483161 (-) False G223538
TU302572 lncRNA downstream 28793 27477266 ~ 27483161 (-) False G223538
TU302574 lncRNA downstream 28793 27477266 ~ 27483161 (-) False G223538
TU302648 lncRNA downstream 59961 27424729 ~ 27451993 (-) True G223587
TU302663 lncRNA upstream 2148 27515960 ~ 27516378 (-) False rreb1a
TU302664 lncRNA upstream 3049 27516861 ~ 27520982 (-) False rreb1a
TU302666 lncRNA upstream 10771 27524583 ~ 27525439 (-) False rreb1a
TU302674 lncRNA upstream 14588 27528400 ~ 27584765 (-) True G223608
TU302675 lncRNA upstream 18931 27532743 ~ 27592465 (-) True G223609
XM_039790741.1 mRNA downstream 7764 27490169 ~ 27504190 (-) False LOC120552569
XM_039790775.1 mRNA downstream 199589 27310012 ~ 27312365 (-) True LOC120552593
XM_039790772.1 mRNA downstream 286962 27223754 ~ 27224992 (-) True LOC120552591
XM_039790757.1 mRNA downstream 306801 27195330 ~ 27205153 (-) False LOC120552579
XM_039790756.1 mRNA downstream 306801 27199401 ~ 27205153 (-) True LOC120552579
XM_039790786.1 mRNA upstream 2154 27515966 ~ 27625569 (-) True rreb1a
XM_039790778.1 mRNA upstream 180528 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA upstream 180528 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA upstream 180528 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA upstream 180728 27694540 ~ 27700331 (-) False LOC120552596
TU302573 other downstream 28793 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 323736 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 1001827 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 1001827 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 1008801 26484235 ~ 26503153 (-) True LOC120552560
TU302721 other upstream 126752 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 165603 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 181042 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 224970 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 236893 27750705 ~ 27754334 (-) True G223665

Expression Profile