RNA id: XM_039790740.1


Basic Information

Item Value
RNA id XM_039790740.1
length 4003
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC120552569
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27258373 ~ 28498012 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCTGAAAGTTTCTAGAAGGTTCAACGGCGCCATAGACGTATGCAACGGCGCAAGAAGTGAAGCGACAACTAAACTAAACCATCCTGAAGCTTTTTgtgaagagaaagaaaggaagctGATGTGAGGACAAACTCAGGGCGGTTTATCAcgcgagctagctagctggctaacgGCTGAAAAAACGctagctagctaacgttaggcatAGATATGAACGTTAGGTTACAGCTGAAGGAAGAGGGTGACGTCACAGACGGGACGTTCAGTGTCAGCTTGGTGGATTTTGGTGGATTGGACTCTTCTGAGGAGAGCGAGGCTCTCCAGATATGACTGGACAGCTGGCTGCCATGGAAACAAAGAGCCCTGACCGACCACAATGTCATCTACTGACTTCAGATCAGAAGATGAGTGatgtggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCTGTCTATGAAGAGTGACCGGTCCAAAGGTCTTCCTCTAGAGTTCAGTAATGAACCTAGACGCTCAGACACAAGACTGACTTCAGATCAGAAGATGAGTGATTtgcaggaagaggaggatggagcAGAGTCTCTAGTATCCGGCTGTCAGTCTATGAAGAGTGACCAGTCCAAAGATACGCCTATGAAGTTCAGTAATgaacctggaccctcagacacaaaAAAGAGAAGGAGTGATGTTTCTAAGGAGCAGCCTTCCAGATGCCGACCCAGAACTAGACTGCAGACAGCCGGTCAGACCAGCACTGTTCAAATAAATGTTGTGCAGCATAAACATAAGATCAGTGTGAAGAGGAAATGTGAACGTGTTACTGAAGGAGCTGATACAACAAGTGGAACTCCCCTTAACAGGATCTACATTTCGCTCTACATCACAGAGGGATGGAGTGAAGAAGTTAATACCCAACATGAGGTTTGGCAGCTTGAGAAGATGAAGACTTTCCATGAAACTCCAATCAGGTGCTGCAACATCTTTAAAGCGTTATCTGaccaacagaaacacatcagaGTTGTTCTGATGCTCGGTGTTGCTGGCGTTGGAAAAACCTTTTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGATTTGGAAAACCAAGATATCAGTCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTAGTCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCATGTTTTCCATCCAACATTACAGGAGGTCACAGCAGAGCAGCTCGCTGGCTCTAAAGTTCTCTTCATCTTTGATGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAACAATGAGGTTGTTTCGGATGTCACACAAAAGTCATCGGTCAATGTGCTGTTGACAAACCTCATTGAGGGGAAGCTGCTTCCCTTGGCTTTCATCTGGACAACTTCCCGACctacagcagccaatcagatccctcctgcaTGTGTTGACAGGGTAACAGAAGTACAAGGCTTCACTGACgaccagaaggaggagtacttcaggaagagagtcAGTGATGAGAAGCTgtccagcagaatcatctcccacatcaagacatccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggtcCACATGTGGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaagaagaagcagaagtatGCAGAGGGACATGAGACGAGTCCACAGGAGCTGATGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGCAGCTGGCATTTGAACAGCTGCAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTACACAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTCGTTCATCTGagcgttcaggagtttctggctgcagtCTACTTCCACCACTGTTACACCAACAGGAACACAAAGGTACTGGAGGACTTCCTGGGGAAGATGTCTCTGGATGTCTACTTGCAGAACGCAATGGAGAAATGCCTTGAAAGTAAGAATGGCCACCTGGACCTATTTGTCCGCTTCCTTCATGGCCTCTCTCTGGAGTCCAACCAGAGACTCTTAGGATGCCTGGTGGGTGAGACAGACAACAGTCCAGAAGTCATTCAGAGAGTCATCAACAACCTGAAGAAGATGAACAGTGATACGATCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAAAGAACAGATCGAAGAAGAAACTCTCTGAGATCCACTGCTCAGCTCTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGACCTGAAGAAGTACAACACAACAGTGGAGGGACGACtgagactgattccagctgtgaGGAACTGCAGAAAGGCTCTACTTTCAGGCTGTGGACTCTCTGAGGCTCACTGCAAAGTTGTGGCCTCAGCGCTGAAGtacaacccctcccatctgagagagctggacctgagtaagaacaacctgcaggactcaggagtgaagcttCTGTCAGCTGGATTAAAGAGTCCAAACTGTCGACTGGAGACTTTGAGAATGTATCGCTGCAGTTTGTCAGCGATCAGCTGTGCTtgtctggcctcagctctgaagtccaacccTTCCCATCTGAGTGAGCTGGACCTGGGTAACAACgtgctgcaggattcaggagtgaagctgctgtgtggtttTCTGGAGAGTCCACAATGTAGACTGAAGACTCTGGAattgTATCACTGCAGTTTGTCAGAGAGCAGCAGTGCTTCTCTGGCCTCAGCGctgaagtccaacccctcccatctgaggaATCTGGAGCTGGGTCTCAACAaactgcaggattcaggagtgaagctgctgtgtggtttTTTGGAGAGTCCACACTGTAAACTGGAAACTCTGAGTTTGAATCGCTGCagtttgtcagagatcagctgtgcttctctggcctcagctctgatgtccaacccctcccatctgagtgAGCTGTGGCtgtataacaacaacaacctgaagAAGTCAGAGGTGAAGCTGCTGTCTGACCTGAAGAAAAGTCCACATTGTAGACTGGATATTCTGGGATGGAATTGGCAGTGGGGATCTGTGTCAGAGTGATCAGAAAGTTGTATAGTGTTGGGACATAATGTGGAGTCCACCATCATCCCTGTGTGTTCCTCTGGATCTGTCAGAGTATCATCAGAGTATCTGGACCACTCTGTTGCtgctctgtccttctacacagtgTCTGCCGACACACTGAGACTCCTCCACTCCTGCTCCACCTTCAACCAcctcctccaccctccacctGGATCTGGGTTTCATCTTCTCTTAATTCAGTCAGATGTTCTGAACCCAAAGTACCTCTGCAGATTAGATCTGTTTATAAACAACTCTacattaacacatttaaatagaTATGTCTGCTTTGCTTTCTGTTCCATCCTGTGGAACAATGCAGTATTGCAGTTAATTCCCACATATTTCTAAATAATATAAGTTGAAATTGCATGTATAAAGTTACTTAATTACCACTAATACCAGCCGATTCCTACATTATAACAGATACATTTTTGCTTGTAACAAACATAAGATAAAACCTGAATTGAATCAAGACTACTGCAGTTTCTCAACCGACTACAAACGGATTATGTCTGGATGTTGATAATTTATTTTGGAAATCATTTTTGATGTAAAGTAATTAACATGCGGACTGTAGATTCCATtattgattgtgtgtgtctataagAAATATTGCAAGTACACAGGAAAATAATCCTGACTCCATTTTTgctgtaaattttttttttttttctactttgaagaatctaaaatataagacatgttttcagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302571 lncRNA downstream 7008 27157973 ~ 27483161 (-) False G223538
TU302568 lncRNA downstream 7008 27477266 ~ 27483161 (-) False G223538
TU302572 lncRNA downstream 7008 27477266 ~ 27483161 (-) False G223538
TU302574 lncRNA downstream 7008 27477266 ~ 27483161 (-) False G223538
TU302648 lncRNA downstream 38176 27424729 ~ 27451993 (-) True G223587
TU302663 lncRNA upstream 1034 27515960 ~ 27516378 (-) False rreb1a
TU302664 lncRNA upstream 1935 27516861 ~ 27520982 (-) False rreb1a
TU302666 lncRNA upstream 9657 27524583 ~ 27525439 (-) False rreb1a
TU302674 lncRNA upstream 13474 27528400 ~ 27584765 (-) True G223608
TU302675 lncRNA upstream 17817 27532743 ~ 27592465 (-) True G223609
XM_039790775.1 mRNA downstream 177804 27310012 ~ 27312365 (-) True LOC120552593
XM_039790772.1 mRNA downstream 265177 27223754 ~ 27224992 (-) True LOC120552591
XM_039790757.1 mRNA downstream 285016 27195330 ~ 27205153 (-) False LOC120552579
XM_039790756.1 mRNA downstream 285016 27199401 ~ 27205153 (-) True LOC120552579
XM_039790963.1 mRNA downstream 300625 27136771 ~ 27189544 (-) True LOC120552735
XM_039790786.1 mRNA upstream 1040 27515966 ~ 27625569 (-) True rreb1a
XM_039790778.1 mRNA upstream 179414 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA upstream 179414 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA upstream 179414 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA upstream 179614 27694540 ~ 27700331 (-) False LOC120552596
TU302573 other downstream 7008 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 301951 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 980042 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 980042 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 987016 26484235 ~ 26503153 (-) True LOC120552560
TU302721 other upstream 125638 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 164489 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 179928 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 223856 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 235779 27750705 ~ 27754334 (-) True G223665

Expression Profile