RNA id: TU302682



Basic Information


Item Value
RNA id TU302682
length 375
lncRNA type read_through
GC content 0.48
exon number 3
gene id G223613
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27548245 ~ 27548734 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


caggcaggcagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacatttttaGGCGATCCAAATGTTCCAGTAGTCATAAATCAAgagagaagtaggctcattttctcagacttctatagaaactatccttccctccatccttctcctcTATCCTTCCTCTCTatccttccctccatccttctcctctatccttccctccatccttctcctctatccttccctccatccttcccctccatccttctcctctatccttccctccatccttctcctctatccttccctccatccttctcctcTATCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302666 lncRNA downstream 22806 27524583 ~ 27525439 (-) False rreb1a
TU302664 lncRNA downstream 27263 27516861 ~ 27520982 (-) False rreb1a
TU302663 lncRNA downstream 31867 27515960 ~ 27516378 (-) False rreb1a
TU302669 lncRNA downstream 34433 27511954 ~ 27513812 (-) False LOC120552569
TU302574 lncRNA downstream 65084 27477266 ~ 27483161 (-) False G223538
TU302671 lncRNA upstream 13002 27561736 ~ 27579199 (-) False G223607
TU302676 lncRNA upstream 13140 27561874 ~ 27592465 (-) False G223609
TU302673 lncRNA upstream 14071 27562805 ~ 27585514 (-) False G223607
TU302672 lncRNA upstream 25188 27573922 ~ 27579199 (-) True G223607
TU302688 lncRNA upstream 25579 27574313 ~ 27574614 (-) True G223617
XM_039790740.1 mRNA downstream 33319 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA downstream 34418 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA downstream 44055 27490169 ~ 27504190 (-) False LOC120552569
XM_039790775.1 mRNA downstream 235880 27310012 ~ 27312365 (-) True LOC120552593
XM_039790772.1 mRNA downstream 323253 27223754 ~ 27224992 (-) True LOC120552591
XM_039790778.1 mRNA upstream 145606 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA upstream 145606 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA upstream 145606 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA upstream 145806 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA upstream 147104 27695838 ~ 27700331 (-) False LOC120552596
TU302573 other downstream 65084 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 360027 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 1038118 26484235 ~ 26510127 (-) False LOC120552560
TU302721 other upstream 91830 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 130681 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 146120 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 190048 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 201971 27750705 ~ 27754334 (-) True G223665

Expression Profile