RNA id: TU302740


Basic Information

Item Value
RNA id TU302740
length 774
lncRNA type intronic
GC content 0.36
exon number 2
gene id G223640
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27640564 ~ 27685979 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGATTTTCAAACATtagtcattttatttattactctTTATCATTTTAGCaatcttttattttgttatatctCAGTAGGCCTATAATCTGTAAAGTATCAATCTTCTGGGATAGACTATCTATAAtagagcttttttttattttctcaaaatcCTTTGATATACATATTCTCTTGTtagatgatttctttttttttagaataagtccattttttttaaactctttttgttaCTCGACATCCCCATTAATAAAGAAACTAaccaacaaacagacaaacaaacataagTACACATCTTTTTGTCAGAAGGCAGCGGAAACGTCATCTGTGCCTCGGCAACGAAATAAACAACGTCCTCGGATTTATTTACCGTGTTTATGTAGTTAATGATGCTACCGTACTGTTGGGACTCAGCTTTTTTAATCTAACTTACAGACCTAAAATATATCcgacacattctcactcccatctcgtaaaatacggacgcttggtcaggtgcctttgacgctaaaagtctccatTAGCGTCAGATCTAAACGCCCTGGGCTGGGACTATTAGCGTCACTTTGGACTATATGGGTCAGAACGTACGTTTAACAGACATggcacaagaatgggacagtaaagtttaggaaaagatcaagggtgggcttataaaaggtatATTTTCAGTGACACCCGCGAATGGGACAGtttggtttaggtaaagaataacgggacagttgggtttaggtaaagaagaacgggacagttgggtttagataaagaagaacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302705 lncRNA downstream 29219 27598141 ~ 27655408 (-) True G223627
TU302736 lncRNA downstream 39174 27645074 ~ 27645453 (-) False G223640
TU302711 lncRNA downstream 80739 27603523 ~ 27603888 (-) True G223633
TU302676 lncRNA downstream 92162 27561874 ~ 27592465 (-) False G223609
TU302755 lncRNA upstream 16634 27702613 ~ 27802788 (-) True G223648
TU302701 lncRNA upstream 28947 27714926 ~ 27719691 (-) True G223626
TU302772 lncRNA upstream 87962 27773941 ~ 27779917 (-) False G223664
TU302773 lncRNA upstream 87962 27773941 ~ 27865723 (-) True G223664
TU302758 lncRNA upstream 108834 27794813 ~ 27841026 (-) True G223651
XM_039790786.1 mRNA downstream 59058 27515966 ~ 27625569 (-) True rreb1a
XM_039790740.1 mRNA downstream 169701 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA downstream 170800 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA downstream 180437 27490169 ~ 27504190 (-) False LOC120552569
XM_039790775.1 mRNA downstream 372262 27310012 ~ 27312365 (-) True LOC120552593
XM_039790778.1 mRNA upstream 8361 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA upstream 8361 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA upstream 8361 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA upstream 8561 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA upstream 9859 27695838 ~ 27700331 (-) False LOC120552596
TU302573 other downstream 201466 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 496409 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 1174500 26484235 ~ 26510127 (-) False LOC120552560
TU302745 other upstream 8875 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 52803 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 64726 27750705 ~ 27754334 (-) True G223665
TU302776 other upstream 64726 27750705 ~ 27753356 (-) False G223665
TU302750 other upstream 70367 27756346 ~ 27795851 (-) True G223646

Expression Profile