RNA id: XM_039790780.1


Basic Information

Item Value
RNA id XM_039790780.1
length 910
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC120552596
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27694340 ~ 27700381 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTACAACGactatttgttttattgttttccaAGTTTAACGTTATTTCATTTAATTATGTCTTTACTGTAACGACTGACACGGCACAAAGCTGTCCCTCAGAATATAACTGCTTTCCCGGTCTAATGTAAGTGTAAATATAACGCCTGTGACCTAAATATCAGTATAAAAACGGAAAAATACGGATTTAGCGCTCgctaggctaatgttagcttcttGTTAGCTTGTTTTAGCTAACTGGCGCAGCCATACCAAGAGgatgAGTGGAGgagtccagcagcagcagttgtaTTTCCTGGGCCTCCCAGACCTGAAGAAGCTGTGCTGTGTGACTATGGCCCTGCCAGAGGACCAGGAGCTGAGGAGCAGACAGATCAAGACCTGCAGAGAGCTGATTTTGCTGTACTCTGATATTGTGGCCTCTCCAGCTCTGGACTCCTTGAGTGAAATCACAGTGGTCATGGccATGTCGTATTTCCAGAAAGGCATCGTTCAGATGTTTGCCCAGAGACGCAGTCTGCAGcTGAGCTcctctcagtgtgtgtttccAGGTGTCCTCCAGTATTGTGTGTCCTTCTCTCTGATCACCAGACTGGCTCCCAGCTGGAACAAAGCAGGACTCTACCTCATCGCTGGCAGTATATACAAATGCTACAGGCACTGGCAGTCCTAATGATTAACGAGAAGTTAAAAATTTATAAATTAAAGCACCAAAACGTCAAAAAAGGGTCATTTATTTTGGAAAAAGctaaagaaaaaacattaaaattgaCACGTCTCGATTCAGGAAATCATTGGCGGTACCCAGAACTATAATATTACTATAGCTGACATGTCTTTGGACCTATAGGCAGTCCTTCCAGATAAatatggagtttttttgtgattgttgcggggcaaaaatccttgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302720 lncRNA downstream 8361 27684390 ~ 27685979 (-) False G223640
TU302738 lncRNA downstream 8361 27684390 ~ 27685979 (-) False G223640
TU302740 lncRNA downstream 8361 27684627 ~ 27685979 (-) False G223640
TU302705 lncRNA downstream 38932 27598141 ~ 27655408 (-) True G223627
TU302736 lncRNA downstream 48887 27645074 ~ 27645453 (-) False G223640
TU302755 lncRNA upstream 2282 27702613 ~ 27802788 (-) True G223648
TU302701 lncRNA upstream 14595 27714926 ~ 27719691 (-) True G223626
TU302772 lncRNA upstream 73610 27773941 ~ 27779917 (-) False G223664
TU302773 lncRNA upstream 73610 27773941 ~ 27865723 (-) True G223664
TU302758 lncRNA upstream 94482 27794813 ~ 27841026 (-) True G223651
XM_039790786.1 mRNA downstream 68771 27515966 ~ 27625569 (-) True rreb1a
XM_039790740.1 mRNA downstream 179414 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA downstream 180513 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA downstream 190150 27490169 ~ 27504190 (-) False LOC120552569
XM_039790775.1 mRNA downstream 381975 27310012 ~ 27312365 (-) True LOC120552593
XM_039790736.1 mRNA upstream 603003 28303334 ~ 28355647 (-) True LOC120552567
XM_039790787.1 mRNA upstream 676748 28377079 ~ 29112293 (-) True LOC120552600
XM_039790735.1 mRNA upstream 1081559 28781890 ~ 28846252 (-) True LOC120552566
XM_039790785.1 mRNA upstream 1229900 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 1424883 29125214 ~ 29147661 (-) True LOC120552571
TU302721 other downstream 8361 27640564 ~ 27685979 (-) False G223640
TU302729 other downstream 8361 27679415 ~ 27685979 (-) True G223640
TU302573 other downstream 211179 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 506122 27104598 ~ 27188218 (-) True G223516
TU302435 other downstream 1191187 26484235 ~ 26503153 (-) True LOC120552560
TU302749 other upstream 38451 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 50374 27750705 ~ 27754334 (-) True G223665
TU302776 other upstream 50374 27750705 ~ 27753356 (-) False G223665
TU302750 other upstream 56015 27756346 ~ 27795851 (-) True G223646
TU302751 other upstream 56015 27756346 ~ 27795851 (-) False G223646

Expression Profile