RNA id: TU302749


Basic Information

Item Value
RNA id TU302749
length 1169
RNA type TUCP
GC content 0.40
exon number 2
gene id G223645
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27738782 ~ 27739972 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcaaaccacaggaagtgacatcagaGACCGGAGCCCTGACATCATCAGCGACCTGCTACCTTGCTTCGACCCAGACACTGGGCGCTTCTCACGATGCTTAAAACGGATAAGAACACGAAGCGCATGTTGTCCTCTCTGATGCTGCGGGGTGGAGAGGTGCATTGTGGGAGATGTAGGACCCAGCGAAGTACCTGAAGttctatatattattttttttgatttttgatttcaTGGCTGCACCGCGGTCCCAGACTGGACCACTTCTTCAGTTTCCTCTTTCTGAGTCCACAGCTCACCGTTTGTTAtagataaatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacacatccacacacacacacacacacacaaagattttTGCTCTCTTTTGTGTCTTTATGTCGACAGAAATGCCACAAAAGTCGAAAAgaaatcgacaaaaacgtcgGAGAGAGAGCCACAAAAATTGCGTCTCCTTTTTCAAGTTTtcttttgaaatttttttgttgttttttccaacatttgtcgccttttttgggACAAATTCGAGCTTTTTCGGACCGCTTCGTCATCATTTTTGTCACAGTTTTTTCAGACAACGTTTTTGGacgtttttgtctccttttttcaattttttttggcactttttccaacatttgtcgccttttttttgGCAAAAATCGACATgcagtaataataaaatcaaagatatttgacttttggaTGGAATAAAAGCATGTCGTGCCCCCTGATCTAGACTGAGAGAGCAATAATCACATTAATCTGTGTTTATAGTTTAAATGTTAAAGGGATCAGACTGTAGGAAACTGAAAGTGATCCGAATCGACcaatcggtgcatccctgagtCTTACTGTTACCTTTGTATTCTAACGCACAAGTCGTCCATCTTTAATgtgattaatctgctgattataaGATCTAGAAGTCCTGTTATTCATTAGATTATTTATCAATGCTCCTCTTGTACAGCGCACGCTgccttcagacactgagagacTTTCTGtcatcattaataataataataataataattgtgtgtAATATCTCACATCAGAAGCGACTGGAAGTCTCAAATAAATCAGTTTTATCCAAATAAAATCAGACGAGAGAGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302743 lncRNA downstream 220 27673565 ~ 27738562 (-) True G223643
TU302704 lncRNA downstream 19091 27632695 ~ 27719691 (-) False G223626
TU302702 lncRNA downstream 19091 27673689 ~ 27719691 (-) False G223626
TU302701 lncRNA downstream 19091 27714926 ~ 27719691 (-) True G223626
TU302720 lncRNA downstream 52803 27684390 ~ 27685979 (-) False G223640
TU302772 lncRNA upstream 33969 27773941 ~ 27779917 (-) False G223664
TU302773 lncRNA upstream 33969 27773941 ~ 27865723 (-) True G223664
TU302758 lncRNA upstream 54841 27794813 ~ 27841026 (-) True G223651
TU302783 lncRNA upstream 73325 27813297 ~ 27813730 (-) True G223671
TU302784 lncRNA upstream 73325 27813297 ~ 27861633 (-) False G223671
XM_039790778.1 mRNA downstream 38451 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 38451 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 38451 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA downstream 38451 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA downstream 38451 27695838 ~ 27700331 (-) False LOC120552596
XM_039790736.1 mRNA upstream 563362 28303334 ~ 28355647 (-) True LOC120552567
XM_039790787.1 mRNA upstream 637107 28377079 ~ 29112293 (-) True LOC120552600
XM_039790735.1 mRNA upstream 1041918 28781890 ~ 28846252 (-) True LOC120552566
XM_039790785.1 mRNA upstream 1190259 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 1385242 29125214 ~ 29147661 (-) True LOC120552571
TU302745 other downstream 38401 27694854 ~ 27700381 (-) False LOC120552596
TU302721 other downstream 52803 27640564 ~ 27685979 (-) False G223640
TU302729 other downstream 52803 27679415 ~ 27685979 (-) True G223640
TU302573 other downstream 255621 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 550564 27104598 ~ 27188218 (-) True G223516
TU302775 other upstream 10733 27750705 ~ 27754334 (-) True G223665
TU302776 other upstream 10733 27750705 ~ 27753356 (-) False G223665
TU302750 other upstream 16374 27756346 ~ 27795851 (-) True G223646
TU302751 other upstream 16374 27756346 ~ 27795851 (-) False G223646
TU302806 other upstream 157526 27897498 ~ 27915833 (-) False G223681

Expression Profile