RNA id: TU302832


Basic Information

Item Value
RNA id TU302832
length 1295
lncRNA type read_through
GC content 0.50
exon number 8
gene id G223686
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 28011028 ~ 28517926 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCATTGGAGAGTCCaaactgtagactggagactctgagATTGGTGCGCTGTggtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGGACCTGACAGACAACGAGAACctgaaggattcaggagtgaagctgctgtgtGCTGGATTGGAGAGTCCaaactgtagactggagactctgagATTGGAGAGCTGCggtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGGACCTGACTAGAAACTACGACctgaaggattcaggagtgaagcagctGTGTGCTGGATTGGAGAGTCCaaactgtagactggagactctgagattgAGGTGGTGCggtttgtcagagatcagctgtgcttctctggcctcagctctgaagaccaacccctcccatctgagagagctggacctggaCTTGAACAGCCTGAAGGAGTCAGACGTGAAGCAGCTGTGTGATCTGAAGGAGAGTCCAgactgtagactggagactctgagATGGAGGAGGTAACAGAGAGAtcaggaggaggatgttggagGACCAGCTGAGTCCTGATGATCCCGAGAgcttgaagcagcagcagcacctctAACTGGGCCATGTTACTGGGAGGTAGAGTGGAGAGACTGACTGAGGCTCTGCACGCTTCCACATTAGCAACGACGCGGGCCATGAAAAGAAGGATGTCGGGCGAGTTGATTGGCCGACATTAGCCTCTGGGTCAGTGGGGGGGCTCTGTCTCCATCAGAATCAGCTGACTCAGCATACGTCAGACTACAGAGTGGAGCCAAGTGTGGAAAGCATATGTTTgctaacatttcacattttaccATCAATGGTAAACTTGACTGTCGTCGCTGCAGGACAGTCAGCTGTTAGTCTGATAAACTTAACTGCCCCCGCTGAAACAACCGTTACCTCACAGAGACCTTTACCCCCCACAGTAACATCTTCTCTTCTAAATTAACCGTTCACATTTAAACTAACGTTAATAGGTGAGGTGATTACCACGCTGTCCACAGCAACGGAAGAGAttagcttcacacacacacacacacacactctctctctctctcttaggcgttttcacacctaaaAGTCTgaaggtccggaccaaggttcatgtttttgttacattgtaacatttgatccggtaagttttggtttcacactgctgtTATGCAAGTGTACAAAAGATCTCTACGTGACAAACCTACGTCCTGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302930 lncRNA downstream 10742 28231070 ~ 28236071 (-) True G223752
TU302931 lncRNA downstream 15324 28231070 ~ 28231489 (-) False G223752
TU302919 lncRNA downstream 51568 28176365 ~ 28195245 (-) False G223746
TU302920 lncRNA downstream 51882 28194528 ~ 28194931 (-) False G223746
TU302921 lncRNA downstream 60175 28178570 ~ 28186638 (-) True G223747
TU302970 lncRNA upstream 67873 28585799 ~ 28617807 (-) False G223770
TU302968 lncRNA upstream 69472 28587398 ~ 28617807 (-) False G223770
TU302963 lncRNA upstream 69555 28587481 ~ 28621566 (-) False G223770
TU302971 lncRNA upstream 74046 28591972 ~ 28617807 (-) False G223770
TU302962 lncRNA upstream 90801 28608727 ~ 28621566 (-) False G223770
XM_039790778.1 mRNA downstream 546482 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 546482 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 546482 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA downstream 546482 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA downstream 546482 27695838 ~ 27700331 (-) False LOC120552596
XM_039790735.1 mRNA upstream 263964 28781890 ~ 28846252 (-) True LOC120552566
XM_039790785.1 mRNA upstream 412305 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 607288 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA upstream 607288 29125214 ~ 29147658 (-) False LOC120552571
XM_039790769.1 mRNA upstream 633508 29151434 ~ 29161971 (-) True LOC120552587
TU302917 other downstream 51388 28194528 ~ 28195425 (-) True G223746
TU302918 other downstream 51388 28194528 ~ 28195425 (-) False G223746
TU302806 other downstream 330980 27897498 ~ 27915833 (-) False G223681
TU302801 other downstream 330980 27914603 ~ 27915833 (-) True G223681
TU302751 other downstream 450962 27756346 ~ 27795851 (-) False G223646
XR_005638031.1 other upstream 282573 28800499 ~ 28846253 (-) False LOC120552566
TU303066 other upstream 782764 29300690 ~ 29305614 (-) False LOC120552583
TU303131 other upstream 961883 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 962692 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 1032469 29550395 ~ 29563368 (-) True G223911

Expression Profile