RNA id: TU302842


Basic Information

Item Value
RNA id TU302842
length 873
lncRNA type read_through
GC content 0.54
exon number 6
gene id G223686
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 28011028 ~ 28517926 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCTAGCAGCaccaagctagcagcaccagggCGCAGCACCAGGCTAGTAGCACCAGGTCAGCACCAGGCTAGCAGCaccaagctagcagcaccaagctagcagcaccaggctagcagcaccaggctagcagcaccaggctagcagcaccaggctagcagcaccaggctagcagcaccaggctagcagcaccaggctagcagcaccaggctaGCCCATGGCAGAGGGAGCAGCAACGTCAACTCAGTGCTGCCAGCCTCGGGTcacacttttcctgctacacgTTCTGGAGATGAGGATTTATTTTAGTGTTATGACTGCAACACAAGattgTGGAGCTGCggtttgtcagagatcagctgtgctgctctggtctcagctctgaagtccaacccctcccatctgaaagagctggacctgaggGGCAACAACctgaaggattcaggagtgaagctgctgtgtGCTGGATTGGAGAGTCCaaactgtagactggagactctgagATTGGAGAGCTGCggtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGGACCTGACTAGAAACTACGACctgaaggattcaggagtgaagcagctGTGTGCTGGATTGAAGAGTCCaaactgtagactggagactctgagATTGAAGATCTGCGAtttgtcagagatcagctgtgctcctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGGACCTGACAGACAACTACAACctgaaggattcaggagtgaagcagctGTGTGCTGGATTGGAGAGTCCaaactgtagactggagactctgaggTCAGTTCATCTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302919 lncRNA downstream 22854 28176365 ~ 28195245 (-) False G223746
TU302920 lncRNA downstream 23168 28194528 ~ 28194931 (-) False G223746
TU302921 lncRNA downstream 31461 28178570 ~ 28186638 (-) True G223747
TU302914 lncRNA downstream 31680 28120835 ~ 28186419 (-) True G223743
TU302883 lncRNA downstream 35990 28179702 ~ 28182109 (-) True G223714
TU302940 lncRNA upstream 1317 28410371 ~ 28517819 (-) False G223758
TU302941 lncRNA upstream 1317 28410371 ~ 28464606 (-) True G223758
TU302950 lncRNA upstream 63598 28472652 ~ 28473868 (-) True G223763
TU302951 lncRNA upstream 93042 28502096 ~ 28595855 (-) False G223764
TU302952 lncRNA upstream 93042 28502096 ~ 28502413 (-) True G223764
XM_039790778.1 mRNA downstream 517768 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 517768 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 517768 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA downstream 517768 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA downstream 517768 27695838 ~ 27700331 (-) False LOC120552596
XM_039790735.1 mRNA upstream 372836 28781890 ~ 28846252 (-) True LOC120552566
XM_039790785.1 mRNA upstream 521177 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 716160 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA upstream 716160 29125214 ~ 29147658 (-) False LOC120552571
XM_039790769.1 mRNA upstream 742380 29151434 ~ 29161971 (-) True LOC120552587
TU302917 other downstream 22674 28194528 ~ 28195425 (-) True G223746
TU302918 other downstream 22674 28194528 ~ 28195425 (-) False G223746
TU302806 other downstream 302266 27897498 ~ 27915833 (-) False G223681
TU302801 other downstream 302266 27914603 ~ 27915833 (-) True G223681
TU302751 other downstream 422248 27756346 ~ 27795851 (-) False G223646
XR_005638031.1 other upstream 391445 28800499 ~ 28846253 (-) False LOC120552566
TU303066 other upstream 891636 29300690 ~ 29305614 (-) False LOC120552583
TU303131 other upstream 1070755 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 1071564 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 1141341 29550395 ~ 29563368 (-) True G223911

Expression Profile