RNA id: TU302861


Basic Information

Item Value
RNA id TU302861
length 1337
lncRNA type intronic
GC content 0.50
exon number 2
gene id G223694
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 28667074 ~ 28761210 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCACATTTGGACTTACCGAGCCTTTCTGCAGTTCCtcacagctggaatcagtctccAGCGTCCCTCCTGTGATGTGTTGTACTGACTCAGGTCCAACTCATCCAGTTCCTCCTCTGACATCTGCAGCATGTAGGCCAGAGCTGAGCAGTGGATctcagagagttccttctttgaTCTGTTCTCTGACTTCAGGAACTCTTGGATCTCCTGATGGACTGAGTGGTCGTTCATCTCCGTTAGACAGTGGAAGATGTTGATGCTTCTGTCAGGAGAGATATTggtcttcttcatcttcttcaggTTGTTGATGCTTCTGTCAGGAGAGATCCCACAAATGTTCATTTCTTTCAGGTTGTTGATGGCTCTCTGGATGATTTCTggactgttgtctgtctgacccagcagGCCTCCTAAGAGTCTCTGGTTGAACTCCAGAGAGAGGCCATGAAGGAAGCGGACAAACATGTCCTGGTGGCCATTTTTACTACTCAGGGATTTCTCCATGGCTCTCTTCAGGAAGACATCCAGGGATGAACTAACATAGTCTTCTCCCAGGAAGTCCTCCAGTATCTGTGTGTTCCTGTTGGTGtaacagtggaacaggtagactgcagccagaaactcctgaacgctCAGATGAACGAAGCAGTAGACTGTTTTCTGGAAGATCACACTCTCTCTTTTGAAGATCTCTGAACAAACTCCTGAGTACAGCGAGACCTCTGTGACATCCAGACCACAGCGCTCCAGGTCTTCTTGGTAGAACATGATGTTTCCTTTCTCCAGCTGTTCAAACGCCAGCCTCCCCAGCTTCAGAAGAACTTCCCTGTCAGCCTCCGTCAGCTCCTGTGGACTCGTCTCATGTCTCTCAGCATACTTGagcttcttcctctttgtctgaaccagcaggaagtgtgagtacatgtcggtcagggtcttgggcagctctcctctctGGTCTGTAGTCAACATGtggtccagaactgtagcagtgatccagcagaagactgggatcagacacatgatgtggaggctcctggatgtcttgatgtgggagatgattctgctggacagctcttcatcactgactctcttcctgaagtactcctccttctggtcGTCAGTGAAGCCTCGTACTTCTGTTACCCTGTCAACACAtgcaggagggatctgattggctgctgcaggtcgggaAGTTATCCAGACGAGAGCCGAGGGAAGCAGCTTCCCCTGGATGAGGTTTGTCAACAGCACGTTGACTGATGACTTCTGTGTGACATCAGAAACAGCCTCATTGTTGTTGAAATCCAGGTAAAGTCTGCTTTCATCCAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638039.1 lncRNA downstream 14150 28651955 ~ 28652924 (-) True LOC120552606
TU302963 lncRNA downstream 45508 28587481 ~ 28621566 (-) False G223770
TU303014 lncRNA upstream 89453 28850663 ~ 28852850 (-) True G223798
TU302869 lncRNA upstream 101165 28862375 ~ 28902431 (-) True G223700
TU303025 lncRNA upstream 146831 28908041 ~ 28928511 (-) True G223808
TU303084 lncRNA upstream 381718 29142928 ~ 29145651 (-) True G223847
TU303088 lncRNA upstream 402746 29163956 ~ 29165000 (-) True G223851
XM_039790742.1 mRNA downstream 170054 27258373 ~ 28497020 (-) False LOC120552569
XM_039790736.1 mRNA downstream 311427 28303334 ~ 28355647 (-) True LOC120552567
XM_039790778.1 mRNA downstream 966743 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 966743 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 966743 27694340 ~ 27700331 (-) True LOC120552596
XM_039790735.1 mRNA upstream 20680 28781890 ~ 28846252 (-) True LOC120552566
XM_039790785.1 mRNA upstream 169021 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 364004 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA upstream 364004 29125214 ~ 29147658 (-) False LOC120552571
XM_039790769.1 mRNA upstream 390224 29151434 ~ 29161971 (-) True LOC120552587
TU302839 other downstream 334882 28207446 ~ 28332192 (-) False G223686
TU302917 other downstream 471649 28194528 ~ 28195425 (-) True G223746
TU302918 other downstream 471649 28194528 ~ 28195425 (-) False G223746
TU302806 other downstream 751241 27897498 ~ 27915833 (-) False G223681
XR_005638031.1 other upstream 39289 28800499 ~ 28846253 (-) False LOC120552566
TU303066 other upstream 539480 29300690 ~ 29305614 (-) False LOC120552583
TU303131 other upstream 718599 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 719408 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 789185 29550395 ~ 29563368 (-) True G223911

Expression Profile