RNA id: TU302946


Basic Information

Item Value
RNA id TU302946
length 1310
lncRNA type read_through
GC content 0.47
exon number 2
gene id G223762
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 28405629 ~ 28407886 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgtgttctataaacgatctgacgaaaaactgttactgtgagatataaagtctacttgtgctacattgggggggggagtaaaagaaaagaacaggACGTCGCACGACTCGCACCACACTGCGGcgattgcttctttttttttatctgaacgcagcttcccgCTGAagtacagagctcatttaagatgatGCTCTGACGTCCCGTTTCCCTGAAGGCAGCGCGGAGCTGCGCCgaacaaagctgacagaagccCAGAAGAGAAGAGTTCTGGTCCAGAGTCTGGTCCagtcgcagtgctgtaaactggcagcttttaatggaGCAGACCTCTGgtttttgcaagtagtttaaagtgtaaacatgtattgttattatcTGAACGCCCTCTGGGGGGGGAATCAGGCCCACCTTGACTTAATCCAGGCCCACCCATCTGTAACGTTCTGCATCcgccactgcacacacacacctatgctTTCAGCACTGTTCGCTGAGGATCCATGTTGGAAAATAAAGTTAACGTCCCGTGAACCGCTGCCTGCACACCGCCCATTGCGAGTCCACTGCGCCCCTGATCTAAATCCACATGTCCCGCTCAGTTGTCTGatatctcctccttttctctgggccagtattcaGTCTGatatctcctccttttctctgggccagtattcaGTCTGatatctcctccttttctctgggccagtattcaGTCTGatatctcctccttttctctgggccagtattctGTATCTCCTGAGAGAGCTCCAGCCAGCGGGGGGGGGCAGCAGGGTCTGACAGTCCAGGCAGACAGCCAGCCATCTGGGGGGGCACTGCACCGCTGTCACGGCAAACTGTGGAGCTCCTCAACTCCCAAACAGTCGTACTAAATTTGCagttagccatacatttttataaaacggcccatatttgagctttagatagttgatttctcgcttaaaataatctcagaagtgaatttagtaatgcaaCAGCAGAGGAACACTGTATAAACTTTCTGAGATTTGCGCGAACgagatttagaagactaactgaccttagatcagttagtggcctatgtaaattttggggtgttacaaagatagaaggtagagccaaatgaggaggatttgGGATGCTTACGGAAGcttctagctttgttgagattggcccgttttcagcagcagtttcaaatagtgagatctgcagaggaaagaggtttCATCAGGATttagagcttctatgtatgtcctagttaccctccaaactgtcctTTACAACTAGGACAGGCTAACATCAGGTTTACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302872 lncRNA downstream 2707 28400963 ~ 28402922 (-) True G223703
TU302938 lncRNA downstream 5162 28310840 ~ 28400467 (-) True G223756
TU302945 lncRNA downstream 9753 28395124 ~ 28395876 (-) True G223761
TU302831 lncRNA downstream 73437 28207446 ~ 28332192 (-) False G223686
TU302939 lncRNA downstream 77935 28313890 ~ 28327694 (-) True G223757
TU302940 lncRNA upstream 2485 28410371 ~ 28517819 (-) False G223758
TU302941 lncRNA upstream 2485 28410371 ~ 28464606 (-) True G223758
TU302950 lncRNA upstream 64766 28472652 ~ 28473868 (-) True G223763
TU302951 lncRNA upstream 94210 28502096 ~ 28595855 (-) False G223764
TU302952 lncRNA upstream 94210 28502096 ~ 28502413 (-) True G223764
XM_039790736.1 mRNA downstream 49982 28303334 ~ 28355647 (-) True LOC120552567
XM_039790778.1 mRNA downstream 705298 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 705298 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 705298 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA downstream 705298 27694540 ~ 27700331 (-) False LOC120552596
XM_039790735.1 mRNA upstream 374004 28781890 ~ 28846252 (-) True LOC120552566
XM_039790785.1 mRNA upstream 522345 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 717328 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA upstream 717328 29125214 ~ 29147658 (-) False LOC120552571
XM_039790769.1 mRNA upstream 743548 29151434 ~ 29161971 (-) True LOC120552587
TU302839 other downstream 73437 28207446 ~ 28332192 (-) False G223686
TU302917 other downstream 210204 28194528 ~ 28195425 (-) True G223746
TU302918 other downstream 210204 28194528 ~ 28195425 (-) False G223746
TU302806 other downstream 489796 27897498 ~ 27915833 (-) False G223681
XR_005638031.1 other upstream 392613 28800499 ~ 28846253 (-) False LOC120552566
TU303066 other upstream 892804 29300690 ~ 29305614 (-) False LOC120552583
TU303131 other upstream 1071923 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 1072732 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 1142509 29550395 ~ 29563368 (-) True G223911

Expression Profile