RNA id: TU303117



Basic Information


Item Value
RNA id TU303117
length 1197
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G223876
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29356619 ~ 29357892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTGCTGCCTTTTTTCGGAGAGGAATTCCAGAGTGCACAGGAAAGAAAAGGTGGTGAGGAAAGCAAACAAAATACTGAagtcaacacacaaaaaaaaaacacagaagtcCGAACTATTGGAATatctatttttgcacattatgtccaAAAGAGGGCAAGCGTAAAACGAGATACATAACTACTTGTGTAGGTACATTTATTTCTACATTAACATATCTTTTTAAAAGACCTACATAcctacattttacaaaataaactgtCCTATGCTATTGCAGTTTATCTTTACAGCTgcaatgattaatcgattagttgtatactattaaataaatcaccaaatatttgataatcaatACggacgctaaagggtgatttttttgCGTCGCTATCTGACTCTGAGAGACGATGTTGGCTGTTGGCTCCgaactagcctagaaatctagaccaccctagcagcagcaaatttaatttgcagccaggggggtctaggcacgcTCCGTTGACttgctggaaaaaccaaaatctggtcaggccaatcacatcgtgtgggtggggcttatggctgctgctgctggaaaaattggtcttctggaagacttggagttaagcttttctttgagaaaagaatggcactgaagtcattcttaaaaaagggagatgtgttcggagttttgccgaccggatacggcaaaaattttaaagtttaatctatcaactagctccgctaccttcttcgttgctctggttggttgtagcgctatcctaatgcgtgcagagggaatttgaaagacaacagtttatcccgcccctctgattgagccctgaccaatggtgagttcccagacctcaacatctggatgtggggctggcttgtcaggctagctcCGAACCTGACTGGAGTCACTCTTTCCTGTCAGCagacatttaaacaaacaaatgtgtcaTTGGATTCCAGGGTGAGCATTTCAACAGGGAGACTTTCAGCTCCTTCAGAAGTTCAGCGCAGTGTGGGCGTGGCCTTTCTCCCTCCAGGCCCCTCCCCCCTCCGCTGAGGCCCCTCCCTCCTGCAGGAGGCGTGTCAGGATGTTGAGCAGGCGCTGATGGACGCCTCTGCCCCGACCTGCCTCCCCTCGGCCACCCACATCCTCCTCCACGCCTCCCTCGGTTTCTGAACACTCCTGGACCGCTCGCTGCAGCTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303114 lncRNA downstream 1738 29348574 ~ 29354881 (-) False G223873
TU303113 lncRNA downstream 7634 29348574 ~ 29348985 (-) True G223873
TU303110 lncRNA downstream 16957 29338253 ~ 29339662 (-) True G223870
TU303090 lncRNA downstream 188942 29164646 ~ 29167677 (-) True G223852
TU303088 lncRNA downstream 191619 29163956 ~ 29165000 (-) True G223851
TU303127 lncRNA upstream 102783 29460675 ~ 29534359 (-) False LOC120552609
XR_005638042.1 lncRNA upstream 102871 29460763 ~ 29464300 (-) False LOC120552609
TU303059 lncRNA upstream 105182 29463074 ~ 29533684 (-) True LOC120552609
TU303054 lncRNA upstream 117352 29475244 ~ 29538617 (-) True G223821
XR_005638041.1 lncRNA upstream 127839 29485731 ~ 29491216 (-) True LOC120552608
XM_039790764.1 mRNA downstream 36685 29300944 ~ 29319934 (-) True LOC120552583
XM_039790769.1 mRNA downstream 194648 29151434 ~ 29161971 (-) True LOC120552587
XM_039790743.1 mRNA downstream 208958 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA downstream 208961 29125214 ~ 29147658 (-) False LOC120552571
XM_039790785.1 mRNA downstream 262414 28930231 ~ 29094205 (-) True dnah5l
XM_039790811.1 mRNA upstream 245210 29603102 ~ 29610341 (-) False dnph1
XM_039790810.1 mRNA upstream 245210 29603102 ~ 29610322 (-) True dnph1
XM_039790966.1 mRNA upstream 255696 29613588 ~ 29620659 (-) True LOC120552738
XM_039790967.1 mRNA upstream 271413 29629305 ~ 29672772 (-) True LOC120552739
XM_039790968.1 mRNA upstream 388616 29746508 ~ 29750259 (-) True inhbaa
TU303066 other downstream 51005 29300690 ~ 29305614 (-) False LOC120552583
XR_005638031.1 other downstream 510366 28800499 ~ 28846253 (-) False LOC120552566
TU302839 other downstream 1024427 28207446 ~ 28332192 (-) False G223686
TU302917 other downstream 1161194 28194528 ~ 28195425 (-) True G223746
TU303131 other upstream 121917 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 122726 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 192503 29550395 ~ 29563368 (-) True G223911
TU303168 other upstream 379724 29737616 ~ 29746456 (-) True G223897
TU303248 other upstream 492764 29850656 ~ 29852068 (-) True LOC120552628

Expression Profile