RNA id: TU303236



Basic Information


Item Value
RNA id TU303236
length 1164
lncRNA type intronic
GC content 0.41
exon number 3
gene id G223948
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29837146 ~ 29865788 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


caggtatgtagagagagagacaggtatgtagaggagagagaggtttGTAGTGATAGAGAGACAATCAtgtggagagagacaggtatgtagatgagagagagactagatagaccgagagagagagagagagagagagagagagagagagactagatagacagagagagagagagagagagagagagagactagatggagagagagacaggtatgtagaggagagagaggtttGTAGTGATAGAGAGACAATCAtgtggagagagacaggtatgtagatGAGAGAGAGACTAGATAGACCGAGAGagactagagagagagagagagagagagagagagagagactagatagacagagagagagagactagatggacagagagagagagactagatggagagagagacaggtatgtagaggagagagaggtttGTAGTGATAGAGAGACAATCAtgtggagagagacaggtatgtagatGAGAGAGAGACTAGATAGACCGAGAGAGactagatagagagagagactagatagacagagagagagagagagagactagatggacagagagagagagactagatggacagagagagagagagactagataGACAGAGATAGactagatagacagagagagaatatatatagagagactagacagacagagagagtttagatatatatagactagatagacagagagagagagagagactagatagacagagagagaggctatatagagagagagagactggtaTGTAGGGATAGAGAGATATGGGTATGTAGAAAGTGTTcctgaacattttttttaaataagaaacAGAggtagaaagagagacacatacagagacagacatgtttGTAGAGAGAAATTCAGGtcggcagagacagacaggtttgtgggaagtgagagaaagaggtgAAGGAGAAGGAATGATCATAGCAAAGAGCCAGGATAAGTTAATTTGTGTATGGATGAgttgtgacaataaagttcATCTGCAAAGTAAACAGCATTGCTTCTGTGGCATTTCTTGAATGAAATCCTATTCGATGCAGAAACGGACCACTTGACCACATAAAATAACATTTGTCACCAACTATTCTATGAATAAATTAACTAGGTGAATCTGTGTTAAGAATCTTGACTTTTTAAAAATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303206 lncRNA downstream 21304 29743948 ~ 29843233 (-) True G223930
TU303174 lncRNA downstream 63467 29753130 ~ 29801070 (-) True G223903
TU303155 lncRNA downstream 77931 29739843 ~ 29786606 (-) False G223895
TU303265 lncRNA upstream 42077 29907865 ~ 29908396 (-) True G223961
XR_005638054.1 lncRNA upstream 81283 29947071 ~ 29948139 (-) True LOC120552633
TU303290 lncRNA upstream 132046 29997834 ~ 30037330 (-) False G223974
TU303291 lncRNA upstream 132327 29998115 ~ 30037330 (-) False G223974
TU303288 lncRNA upstream 169989 30035777 ~ 30086423 (-) True G223974
XM_039790813.1 mRNA downstream 7732 29850963 ~ 29856805 (-) False LOC120552628
XM_039790968.1 mRNA downstream 114278 29746508 ~ 29750259 (-) True inhbaa
XM_039790967.1 mRNA downstream 191765 29629305 ~ 29672772 (-) True LOC120552739
XM_039790966.1 mRNA downstream 243878 29613588 ~ 29620659 (-) True LOC120552738
XM_039790810.1 mRNA downstream 254215 29603102 ~ 29610322 (-) True dnph1
XM_039790791.1 mRNA upstream 34622 29900410 ~ 29924741 (-) True LOC120552613
XM_039790800.1 mRNA upstream 430694 30296482 ~ 30333279 (-) True xylb
XM_039790806.1 mRNA upstream 514321 30380109 ~ 30386006 (-) True crygn2
XM_039790795.1 mRNA upstream 539395 30405183 ~ 30420550 (-) True LOC120552615
XM_039790797.1 mRNA upstream 539395 30405183 ~ 30420549 (-) False LOC120552615
XR_005638049.1 other downstream 7565 29851546 ~ 29856972 (-) False LOC120552628
XR_005638048.1 other downstream 7565 29851546 ~ 29856972 (-) False LOC120552628
TU303248 other downstream 12469 29850656 ~ 29852068 (-) True LOC120552628
TU303168 other downstream 118081 29737616 ~ 29746456 (-) True G223897
TU303182 other downstream 301169 29550395 ~ 29563368 (-) True G223911
XR_005638047.1 other upstream 541168 30406956 ~ 30420547 (-) False LOC120552615
TU303357 other upstream 595714 30461502 ~ 30465869 (-) False G224031
XR_005638046.1 other upstream 609530 30475318 ~ 30493379 (-) False LOC120552614
TU303394 other upstream 766958 30632746 ~ 30681582 (-) True G224051
TU303612 other upstream 1344973 31210761 ~ 31211360 (-) True G224195

Expression Profile