RNA id: XM_039790813.1


Basic Information

Item Value
RNA id XM_039790813.1
length 541
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC120552628
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29850656 ~ 29856972 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagGTGGATGGCCATACTGCAGTCTGATGTCGGTGGAGTGAGCGCCACTGTGCTCTGATATCTGTTTAGAGACTTTTAAATAGCGGACTTTTCCTTATTCCTTCTCTCCATTCTGTCTGGTTTGTGTGTCCGTGAGGAAAACTCTCTGACGAAGAAATCAGCCCGGAGATTGTCCCTCCTTTCCCCAAGGCTGGCCCTAGAAAGACTACaatgagaaaagggagaaagagGACGACTGCACTACTCACCGACTCTCCGGTGAGGGCAGCTTTGGAGGAGGCCAAACAGCAGCGTGGACCTAAGCCCTCCTCCAAGGCACCGAGAAAAAGGCTCTTCtcgccccccccaccaccaccacagttGCCCCTTGCTCTGCCGCTAGGTCCTCTGCTGCAGGAGCCCCTCCTGGAGCCGCCTCTGCCGCCACCACCACCTGGTCCTCTGCTGCAGGAGCCCCTGCCATCCTCTGCAGACCCTCTCTtctactctggaggactcaggACCTGAAGACACAGGGTTTCTGTTTAAAGCCCAGGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303206 lncRNA downstream 7730 29743948 ~ 29843233 (-) True G223930
TU303174 lncRNA downstream 49893 29753130 ~ 29801070 (-) True G223903
TU303170 lncRNA downstream 57976 29700559 ~ 29792987 (-) True G223899
TU303155 lncRNA downstream 64357 29739843 ~ 29786606 (-) False G223895
TU303153 lncRNA downstream 64357 29757381 ~ 29786606 (-) True G223895
TU303233 lncRNA upstream 7732 29864537 ~ 29865788 (-) False G223948
TU303236 lncRNA upstream 7732 29864537 ~ 29865788 (-) True G223948
TU303265 lncRNA upstream 51060 29907865 ~ 29908396 (-) True G223961
XR_005638054.1 lncRNA upstream 90266 29947071 ~ 29948139 (-) True LOC120552633
TU303290 lncRNA upstream 141029 29997834 ~ 30037330 (-) False G223974
XM_039790968.1 mRNA downstream 100704 29746508 ~ 29750259 (-) True inhbaa
XM_039790967.1 mRNA downstream 178191 29629305 ~ 29672772 (-) True LOC120552739
XM_039790966.1 mRNA downstream 230304 29613588 ~ 29620659 (-) True LOC120552738
XM_039790811.1 mRNA downstream 240622 29603102 ~ 29610341 (-) False dnph1
XM_039790810.1 mRNA downstream 240641 29603102 ~ 29610322 (-) True dnph1
XM_039790804.1 mRNA upstream 4997 29861802 ~ 29895595 (-) False eci2
XM_039790803.1 mRNA upstream 4997 29861802 ~ 29895593 (-) True eci2
XM_039790791.1 mRNA upstream 43605 29900410 ~ 29924741 (-) True LOC120552613
XM_039790800.1 mRNA upstream 439677 30296482 ~ 30333279 (-) True xylb
XM_039790806.1 mRNA upstream 523304 30380109 ~ 30386006 (-) True crygn2
TU303168 other downstream 104507 29737616 ~ 29746456 (-) True G223897
TU303182 other downstream 287595 29550395 ~ 29563368 (-) True G223911
TU303131 other downstream 307612 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other downstream 360258 29480618 ~ 29490705 (-) False LOC120552608
TU303066 other downstream 545349 29300690 ~ 29305614 (-) False LOC120552583
XR_005638047.1 other upstream 550151 30406956 ~ 30420547 (-) False LOC120552615
TU303357 other upstream 604697 30461502 ~ 30465869 (-) False G224031
XR_005638046.1 other upstream 618513 30475318 ~ 30493379 (-) False LOC120552614
TU303394 other upstream 775941 30632746 ~ 30681582 (-) True G224051
TU303612 other upstream 1353956 31210761 ~ 31211360 (-) True G224195

Expression Profile