RNA id: TU303288


Basic Information

Item Value
RNA id TU303288
length 1558
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G223974
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29997834 ~ 30132250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGCCTTTCTGCAGTTCATCACAGCTGGAACCAGTCTCAGTTTTCCCTCTGGTGATGTGTTGTACTGACTCAGGTCCAACTCATCCAGAACCTCCTCTGACATCTGCAGCATGTAGGCCAGAGCTGAGCAGTGGATCTCAGAGAGTTTCTTCTCTGATCTCTTCTTTGACTTCAGGAACTCTTGGATCTCCTGATGGACTGAGTGGTCGTTCATCTCCGTCAGACAGTGGAAGATGTTGATGCTTCTGTCAGGAGAGATATTGgttttcttcatcttcttcaggTTGTTGATGGCTCTCTGGATGATTTCTggactgttgtctgtctgacccagcagGCCTCCTAAGAGTCTCTGGTTGGACTCCAGAGAGAGGCCATGAAGGAAGCGGACAAACAGGTCCAGGTGGCCATTTTTACTTTCAAGTGATTTCTCCATGGCTCTCTTCAGGAATACTTCCAGGGATGGGTAATTGTCACGTTCACTGTCACCATGGCTATGTTTCTTTCCAAAAGACTTAGAAATCTTCTTGAGAAAAGACTTGTGCTTGAAGTCTTCTCCCAGGAAGTCCTCCAGtacctgtgtgttcctgttggtgtaacagtggaacaggtagactgcagccagaaactcctgaacgctCAGATGAACGAAGCAGTAGACTGTTTTCTGGAAGATCACACTCTCTCTTTTGAAGATCTGTGAACAAACTCCTGAGTACAGCGAGGCCTCTGTGACATCCAGACCACAGCGCTCCAGGTCTTCTTGGTAGAACATGATGTTTCCTTTCTCCAGCTGTTCAAACGCCAGCCTCCCCAGCTTCAGAAGAACTTCCCTGTCAGCCTCCGGTCAGCTCCTGTGGACTCGTCTCCATGTCCCTCAGCATACTTGagcttcttcctctttgtctgaaccagcaggaagtgtgagtacatgtcagtcagggtcttgggcagctctcctctctGGTCTGTAGTCAACATGtggtccagaactgtagcagtgatccagcagaagactgggatcagacacatgatgtggaggctcctggatgtcttgatgtgggagatgattctgctggacagctcttcatcactgactctcttcctgaagtactcgtCCTTCTGGGCGTCAGTGAAGCCTCGTACTTCTGTTACCCTGTCAACACacgcaggagggatctgattggctgctgcaggtcgggaAGTTATCCAGACGAGAGCCGAGGGAAGCAGCTTCCCCTGGATGAGGTTTGTCAACATCACGTTGACTGATGACTTCTGTGTGACATCAGAAACAGCCTCATTGTTGTTGAAATCCAGGTAAAGTCTGCTTTCATCCAGGCCGTCAAAGATGAAGAGAACTTTAGAGCCAGCGAGCTGCTCTGCTGTGACCTCCTGTAATGATGGATGGAAAACACGGAGCAGCTCCAGAAGACTGTACTGCTCATCTTTGATCAAGTTCAGCTCCCTGAAGGAAAGAGGAATCACCAGATCCACATCTTGGTTCTCCAAACCCTCGGCCCAGTCCAGACAGAACTTCTGCACTGAGAAGGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638054.1 lncRNA downstream 87638 29947071 ~ 29948139 (-) True LOC120552633
TU303265 lncRNA downstream 127381 29907865 ~ 29908396 (-) True G223961
TU303237 lncRNA downstream 169989 29837146 ~ 29865788 (-) False G223948
TU303328 lncRNA upstream 124738 30211161 ~ 30211846 (-) True G224011
TU303332 lncRNA upstream 212001 30298424 ~ 30298851 (-) True G224015
TU303351 lncRNA upstream 280434 30366857 ~ 30368502 (-) True G224025
TU303334 lncRNA upstream 288989 30375412 ~ 30378008 (-) True G224016
TU303358 lncRNA upstream 311453 30397876 ~ 30493383 (-) False G224031
XM_039790791.1 mRNA downstream 111036 29900410 ~ 29924741 (-) True LOC120552613
XM_039790804.1 mRNA downstream 140182 29861802 ~ 29895595 (-) False eci2
XM_039790803.1 mRNA downstream 140184 29861802 ~ 29895593 (-) True eci2
XM_039790813.1 mRNA downstream 178972 29850963 ~ 29856805 (-) False LOC120552628
XM_039790968.1 mRNA downstream 285518 29746508 ~ 29750259 (-) True inhbaa
XM_039790800.1 mRNA upstream 210059 30296482 ~ 30333279 (-) True xylb
XM_039790806.1 mRNA upstream 293686 30380109 ~ 30386006 (-) True crygn2
XM_039790795.1 mRNA upstream 318760 30405183 ~ 30420550 (-) True LOC120552615
XM_039790797.1 mRNA upstream 318760 30405183 ~ 30420549 (-) False LOC120552615
XM_039790796.1 mRNA upstream 318760 30405183 ~ 30420549 (-) False LOC120552615
XR_005638049.1 other downstream 178805 29851546 ~ 29856972 (-) False LOC120552628
XR_005638048.1 other downstream 178805 29851546 ~ 29856972 (-) False LOC120552628
TU303248 other downstream 183709 29850656 ~ 29852068 (-) True LOC120552628
TU303168 other downstream 289321 29737616 ~ 29746456 (-) True G223897
TU303182 other downstream 472409 29550395 ~ 29563368 (-) True G223911
XR_005638047.1 other upstream 320533 30406956 ~ 30420547 (-) False LOC120552615
TU303357 other upstream 375079 30461502 ~ 30465869 (-) False G224031
XR_005638046.1 other upstream 388895 30475318 ~ 30493379 (-) False LOC120552614
TU303394 other upstream 546323 30632746 ~ 30681582 (-) True G224051
TU303612 other upstream 1124338 31210761 ~ 31211360 (-) True G224195

Expression Profile