RNA id: TU303334


Basic Information

Item Value
RNA id TU303334
length 2550
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G224016
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 30375412 ~ 30378008 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggggaaaaaggcgacaaaaacgtcaaaataaaactgtcaaaaaaaactcaaacatcAAAAATTGTCGGAAAAacttgaaaacaaaaatgttgagaAAACTGTCCCAAAAAGCTGAAAACAAAAGCAATGAAAACCTTACAAAAAAAagcctctctcccacctttACTGTCCATCCACTGtcagcccccaaaaaaataatctttaaaaaaaaataaaaaaacacacaaacaaaaaccttCATTTCCTTTTATTGTCAACATGAGACACCAAACTCAACATTAAcatcaaattaatttaaaatcaaaacgTCACAAAACACTAAACTTTGCTTCTTGCCGTcagaacaataaaaaataaaaataaaatcactttgAGCAgctttttaaacaaacaaacaacattcCTTTGGTTTCTCCAAAAATAAACAACCAATGATTTCATTTAGAAAATAATATTCATCCGTTCGGAGGAagaatcataataataaaaagggaaaagtGCTGCCAACACAAAACCTCTCTAAGAATCTAATCAAACATTTCTTTCTCTGATCTCTGTGACTCGGCTGAATTATGAATTATTGCTGATTAATGAAACTTAAAGAAGAAGTCATTATTTCTGCAGCTGTTGGCACTTTGAAGTttactacaaaaaaaaagtgcagaaaataTCACCAGTACCGTTTTAAATGGATAACTGGATGTGTgtcacacagtgtgtgtgtgtgtgcgtgcatgtgtatggttagtgtgtgagagtgtgtgtgtgtgtagttagtgtgtgcttgcgtgcatGTATgtcacacagtgtgtgtgtgtgtgtgcgagtgcatgtgtcacacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtGTCACacagtgcgtgtgtgtcctctgcTCAGGTACATCTTCATGGTCTGGATCAGCTGACTCTCCTCCTCCAGCGTCAGGTCCAGGTAATCTTCCTCGTGGCGAGAAATGTCCTCCAGCACCTCGTTGACCAGCTCGTTGTCCTCTGGCAACAacacaattattaataataagaaagagtgtgtgagagagtgagagtgagagtgtgacagagagtgagtgtgtgagagagagtgtgtgagtgtgagagagagtaagtgtgagagagagtgagtgaaactGAGTGTGTGGTACCTGTGGACGTGGAGGAGGAGGTGCTGGGCTCCTCAGAGGACggtgaggaggaggtggagggcgGGGACTCAGACAGCAGCTCCGCTGATAGGACGCCCTGGTTGTCCAGCAGCAGCTGAGTCGCTGATTGGACGTCTCCGGCTGTCAGTCTCAGGGCTGCCTCAGAGACGTCCCTCTCAAAGCCCAGATACAGCAgctggacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtttgatTGGTTCTGAAAAGGTTCAGGCCTGTAAACATTACCTGCTCCACCTTctctggacagacagacagacagacagagacagacaggtacctgGTCCACCTTCTCTGGACTGAGTGCTCCCTCTGTGTTGTTATTGGTTGCCTGAGCAGCCTGACTCGAGTCCAACAGGATCTGGAGACAGAGAACAAGTTCAACTCTCTCCTCAACCTTCACTCCTTCAAATAttacaacagacagacagacagaggagaggagacagacagacagacagacagacggacagacagacagacagacagacactgacTGCGTAAGCTTTGTCCACGTCTCCGTCAGCGAGCTGCAGAGCTCTGGCGGCGTCTCTGCGGGAGAATCCGAGCTCTGTGAGCGTAGAGATCACCTCCatccttctgctcctcttctgtctctctctctgcttcagcTCCTCTCGCtcctggtacacacacacacacacaccgctgggTTCAATATACTGACAACAACACAATAAACACtctatgtatatttatttattattggaaCGGGAATTGTATTTAACGTTGAACAGAaagagtttgatttaaaatagGTGATTAAAAAAGTAATGACAGTATAGGGTGCTGCTGAAGGTAcactctgtatgtgtctgtctgtgtgtgagtgtgtgtgtgtgtgtgtgagacctgtCTCTGGTTGCTGATGTGGATGGCTGCCTCCTCCAGGTCTCCCTGACAGGCTCGGAGGCCGAGTCGAGCTTCTCTCTCTGTGAACCCGAGAACCATCAGCTGAGACATCTTCTCAGAGTCCAGACACAGACGGCTGTACAGAGACTCCACCTgacagagacacaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacattatgacTCTTTTCGTATGTACACAGATTCCACCTAACACACACAACtgagttttttgttgttatgtTTTTGCAGAGCCAAAGGACGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303351 lncRNA downstream 6910 30366857 ~ 30368502 (-) True G224025
TU303332 lncRNA downstream 76561 30298424 ~ 30298851 (-) True G224015
TU303328 lncRNA downstream 163566 30211161 ~ 30211846 (-) True G224011
TU303287 lncRNA downstream 243162 30085816 ~ 30132250 (-) False G223974
TU303300 lncRNA downstream 254556 30039732 ~ 30120856 (-) True G223983
TU303358 lncRNA upstream 19868 30397876 ~ 30493383 (-) False G224031
TU303365 lncRNA upstream 19868 30397876 ~ 30465869 (-) False G224031
XR_005638053.1 lncRNA upstream 19905 30397913 ~ 30399929 (-) True LOC120552632
TU303361 lncRNA upstream 63325 30441333 ~ 30443890 (-) False G224031
TU303367 lncRNA upstream 91806 30469814 ~ 30578444 (-) False G224031
XM_039790800.1 mRNA downstream 42133 30296482 ~ 30333279 (-) True xylb
XM_039790791.1 mRNA downstream 450671 29900410 ~ 29924741 (-) True LOC120552613
XM_039790804.1 mRNA downstream 479817 29861802 ~ 29895595 (-) False eci2
XM_039790803.1 mRNA downstream 479819 29861802 ~ 29895593 (-) True eci2
XM_039790813.1 mRNA downstream 518607 29850963 ~ 29856805 (-) False LOC120552628
XM_039790806.1 mRNA upstream 2101 30380109 ~ 30386006 (-) True crygn2
XM_039790795.1 mRNA upstream 27175 30405183 ~ 30420550 (-) True LOC120552615
XM_039790797.1 mRNA upstream 27175 30405183 ~ 30420549 (-) False LOC120552615
XM_039790796.1 mRNA upstream 27175 30405183 ~ 30420549 (-) False LOC120552615
XM_039790798.1 mRNA upstream 29050 30407058 ~ 30420549 (-) False LOC120552615
XR_005638049.1 other downstream 518440 29851546 ~ 29856972 (-) False LOC120552628
XR_005638048.1 other downstream 518440 29851546 ~ 29856972 (-) False LOC120552628
TU303248 other downstream 523344 29850656 ~ 29852068 (-) True LOC120552628
TU303168 other downstream 628956 29737616 ~ 29746456 (-) True G223897
TU303182 other downstream 812044 29550395 ~ 29563368 (-) True G223911
XR_005638047.1 other upstream 28948 30406956 ~ 30420547 (-) False LOC120552615
TU303357 other upstream 83494 30461502 ~ 30465869 (-) False G224031
XR_005638046.1 other upstream 97310 30475318 ~ 30493379 (-) False LOC120552614
TU303394 other upstream 254738 30632746 ~ 30681582 (-) True G224051
TU303612 other upstream 832753 31210761 ~ 31211360 (-) True G224195

Expression Profile