RNA id: TU303417


Basic Information

Item Value
RNA id TU303417
length 1034
lncRNA type sense_over
GC content 0.45
exon number 3
gene id G224069
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 30800614 ~ 30824856 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaattatctcaggacactttacagacagagtaggtctagaccacactctataatttacaaagacccaacagttccagtgattcccccaagagcGTGCATGAAAGTTGCATGAAAGTTGAAGAACACGCTGTAATTTCATtgtatcaatgggaaacatccatgtgtccagacaaggctagcagcagcagcagcagcagcagcagcagcgctgcgtcagacacctttctggtggggaaagacgtagaaaacgccacgcaaccGCCACGCAACGGAAACGCAGAAGGCCTTAGATCGTAGATGATACCAATATCTTCACTCTCGCTTTCAAACCGAGCCTTTTACAACATGCATGTCCGGTTgtatgattatttaaatgaagaTGTATTTGTGATACGAGTGTTCAATAGAGACCAGAGTCAGTGTGAAGGTGTGTGAGAGTTTATTGACAGAATATTAACACTTCATCAtaaaactaaatatctgtctctatctctttaCAAATATAATCACTCTGATGTTTCAGGCTGTACAACACTGAAACATATAATACAGtccattattataaatataagcacacacacactctcacacacacacgcacacaaacatacatacagagacacacacacacacacacacacacacagacacacacaacacacacacagacacacacacacacacacacacacacacatacacacacagagacacacacacacacacacacacagacacacacacacacacacacagacacacacacacacacacacagacacacacagacacacacacacacacacacacacacacacacacacacacacaaacacacacagacacacacagacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtggtcTGTTCCTCCCACCCCACCCACTTGAGAGTTCTCGGTCCTCATATCcaaaccagagaaggtaacggG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303429 lncRNA downstream 351 30799968 ~ 30800263 (-) True G224081
TU303430 lncRNA downstream 351 30799968 ~ 30800263 (-) False G224081
TU303410 lncRNA downstream 81396 30714913 ~ 30719218 (-) True G224065
TU303387 lncRNA downstream 216540 30530475 ~ 30584074 (-) True G224044
TU303367 lncRNA downstream 222170 30469814 ~ 30578444 (-) False G224031
XR_005638058.1 lncRNA upstream 11518 30836374 ~ 30840555 (-) True LOC120552651
XR_005638059.1 lncRNA upstream 15973 30840829 ~ 30842486 (-) True LOC120552652
TU303452 lncRNA upstream 33636 30858492 ~ 30859017 (-) True G224101
TU303420 lncRNA upstream 36660 30861516 ~ 30884048 (-) True G224072
TU303474 lncRNA upstream 93647 30918503 ~ 30920795 (-) False G224117
XM_039790971.1 mRNA downstream 201682 30579491 ~ 30598932 (-) True LOC120552744
XM_039790793.1 mRNA downstream 307235 30446866 ~ 30493379 (-) True LOC120552614
XM_039790794.1 mRNA downstream 307235 30450088 ~ 30493379 (-) False LOC120552614
XM_039790792.1 mRNA downstream 307235 30474069 ~ 30493379 (-) False LOC120552614
XM_039790798.1 mRNA downstream 380065 30407058 ~ 30420549 (-) False LOC120552615
XM_039790834.1 mRNA upstream 192974 31017830 ~ 31020186 (-) False LOC120552646
XM_039790832.1 mRNA upstream 192974 31017830 ~ 31020186 (-) False LOC120552646
XM_039790831.1 mRNA upstream 192974 31017830 ~ 31020186 (-) True LOC120552646
XM_039790830.1 mRNA upstream 192974 31017830 ~ 31020186 (-) False LOC120552646
XM_039790836.1 mRNA upstream 193636 31018492 ~ 31020186 (-) False LOC120552646
TU303394 other downstream 119032 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 307235 30475318 ~ 30493379 (-) False LOC120552614
TU303357 other downstream 334745 30461502 ~ 30465869 (-) False G224031
XR_005638047.1 other downstream 380067 30406956 ~ 30420547 (-) False LOC120552615
XR_005638048.1 other downstream 943642 29851546 ~ 29856972 (-) False LOC120552628
TU303612 other upstream 385905 31210761 ~ 31211360 (-) True G224195
TU303705 other upstream 475167 31300023 ~ 31301032 (-) True G224245
TU303660 other upstream 509950 31334806 ~ 31337397 (-) False LOC120551970
TU303782 other upstream 791214 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 800440 31625296 ~ 31660992 (-) False G224289

Expression Profile