RNA id: XM_039790834.1


Basic Information

Item Value
RNA id XM_039790834.1
length 1364
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120552646
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31017830 ~ 31020186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAAGGGAAAAGAGCGTGCAGAAATGTTCTCTGCAGCGGAACAAACCCTCCTCATGGAGGTATATGAGGATTACAGCCACATAATCCGAAAGAAGGGCAATACTGCGGCAATCAATAAAGCGAGGGATGTGGCGTGGCAGAATATTGCCGACAGGCTGAATGCAAGCAATCTCAGTAGCCAGAGGAGGACCGGCCACCAGGTCAAAATCAAATATAAGAACATTCTTAGCAATGCCACCAGAAAGCAGACTGCATCCATGGGTACTGGTGGGGGACCGCCACCGGAGGAGCTCACACCAGCTGAGATCCTGGCCCTTGGGATAAATAAGGGGCCCAAGATAGTTGGGATCGAGGGGGGGAGCTACTCCAACCCTGTGGCCCCAGAGATCCGGGCCCCATATGTTGAAGTGACAGGGGATCAAATTATTCTCCTTGACCCACCACAAGTGCACATTGAGGATGCAGCCGGGACCCAAGTCGACCCAGGAGAAGGCCCAAGCCAACAGccacatgatgatgatgatgatgatgatgatgatgatgactatGACGATGATGAAACGCTCACCGGTCGAGACAGTGAGCTCCAAGATGAACCTAGGCCTTCCCCAGCTGGCAAGAGGACTACATCTGCTGGACGAAGTGAAGACATCCGTGCAATTTATAAGCGGTATCTCCTCCATGCAACGGAGTATAAGAGGCTACAGATTAAGAAGATCAAACTTGAGATCAGGAAGATGGAAAAGGATGTAAGTATGAATCCAAATGCACAGCAAAAGAGGTCATTGTTCTCACTGTATTTAATGTTCCATTCTGTCTCCACAGCCTGACCTGCGTGACCCACCAACATaaccattttattttcaatgcctCAATTTcctttgattatattttgtttgctaattagtttaattttgtatttatttgtgtctTAATTTTGTGATAATGTTCTTTAATGtacttataatatataattattagtataaatgataaaaaaaatattatattagcATTCCATGACAGTTGTGTGActctgtttctgtttattggaCATTCTTTGATCATAGATGGTACTAAGCTTCACTTTTAGCCTGCTACAGACCAGGTTTGCCTGgcagcataagttaccatggttacttggctggcaTTCACTTTAGCCACCTTAGTGGAACAGGGTTGAGGCTCAGATTGATGGAACGGAAACCTGAGCCACAGTTCTGGCTTAGCCATGGTTGAGGCTTAGCCAGAGTCATAGTTTCCATGGTTACTGAGTTGGGGCTAATCTCAGCCTCTTTGATGGAACCGAACTCTCACTCATATTAGCCAGACTTGGCCATTTAGGCTTGGCTTTGCCTTTAGCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303530 lncRNA downstream 20441 30996511 ~ 30997389 (-) True G224151
TU303497 lncRNA downstream 54388 30962281 ~ 30963442 (-) True G224133
TU303489 lncRNA downstream 80518 30937060 ~ 30937312 (-) True G224126
TU303476 lncRNA downstream 95020 30920803 ~ 30922810 (-) True G224118
TU303479 lncRNA downstream 95020 30920803 ~ 30922810 (-) False G224118
TU303504 lncRNA upstream 8220 31028406 ~ 31045131 (-) True G224135
TU303507 lncRNA upstream 8220 31028406 ~ 31086609 (-) False G224135
TU303502 lncRNA upstream 8632 31028818 ~ 31086609 (-) False G224135
TU303537 lncRNA upstream 13580 31033766 ~ 31038112 (-) True G224156
TU303545 lncRNA upstream 14906 31035092 ~ 31125325 (-) True G224160
XM_039789911.1 mRNA downstream 211494 30797184 ~ 30806336 (-) True LOC120552139
XM_039790971.1 mRNA downstream 418898 30579491 ~ 30598932 (-) True LOC120552744
XM_039790793.1 mRNA downstream 524451 30446866 ~ 30493379 (-) True LOC120552614
XM_039790794.1 mRNA downstream 524451 30450088 ~ 30493379 (-) False LOC120552614
XM_039790792.1 mRNA downstream 524451 30474069 ~ 30493379 (-) False LOC120552614
XM_039790826.1 mRNA upstream 77880 31098066 ~ 31102487 (-) True LOC120552642
XM_039789916.1 mRNA upstream 213568 31233754 ~ 31238960 (-) True LOC120552143
XM_039789917.1 mRNA upstream 278412 31298598 ~ 31328575 (-) True zbtb14
XM_039789570.1 mRNA upstream 310510 31330696 ~ 31337391 (-) True LOC120551970
XM_039790311.1 mRNA upstream 443426 31463612 ~ 31511341 (-) False epb41l3a
TU303394 other downstream 336248 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 524451 30475318 ~ 30493379 (-) False LOC120552614
TU303357 other downstream 551961 30461502 ~ 30465869 (-) False G224031
XR_005638047.1 other downstream 597283 30406956 ~ 30420547 (-) False LOC120552615
XR_005638048.1 other downstream 1160858 29851546 ~ 29856972 (-) False LOC120552628
TU303612 other upstream 190575 31210761 ~ 31211360 (-) True G224195
TU303705 other upstream 279837 31300023 ~ 31301032 (-) True G224245
TU303660 other upstream 314620 31334806 ~ 31337397 (-) False LOC120551970
TU303782 other upstream 595884 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 605110 31625296 ~ 31660992 (-) False G224289

Expression Profile