RNA id: TU303546



Basic Information


Item Value
RNA id TU303546
length 1042
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G224161
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31046727 ~ 31097325 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTGCCGTTTTAGAAgacttttttcccttttctcctttttctccaCTTTACCCGAGttggttttaaaagaaaaagtgatattATGCCTCGATAACTGTCACATCGCTCCACACTCCAATATTTTAAAGTAGTAGTAATGTTTCGAGGTCAGTCACATACCAACAACACATTATCCACATAATCTAGACCAGTGgtttcaaccttttttgagcCACGGCACATTGTTTACATTAAAAAGATCCTGCGGCAAACCACCaaccaaaaatgtttaaaaatgacacattgtacCGAAATAAGATCAGAATCtgcatttttccttttaaaaaatgtatccatcgcTGTTACAGGCTTACATCGATGATCTCGGCCCTACTGTTTACATCCTGGCACCGCCACCAGCTGGCAGGAGTTCTATTGTCTTAAATCAACAACGTCATTATTGCGCTATACTGCCTCCTACTGACACAGAATGGTATTTCATTTCTCTACcagtcatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacatacaggctcacacatacacacacacacacacacacacacacacacacacacacacactcacatacacacaaacacaaacatacaggctcacacacacacaaattcctGTATGGGCTGAAGAGTGAGGACCGGGTATAATTGCTATTGAAGTAGGACCACCATTTCTGCTACACTTACAGACAAAGTAATGCTATATTTAAACACTAGATGTCTCCCTGACTCAGTTTTCCACCTCAGCTTGTTTTTAAAACAAAGTATAAGAACCGTCATTGTACCATTGAAGTGAGGACcatttctagggggcgctattgGGTTCAGTTCTGGCTAGACTATTTTAACTACCTTCTTTCTTTTGCTTGCCGttattcacatacacacatacagagagtcaaacacacagagagacacacacacacacacacacacacagacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU303504 lncRNA downstream 1596 31028406 ~ 31045131 (-) True G224135
TU303537 lncRNA downstream 8615 31033766 ~ 31038112 (-) True G224156
TU303536 lncRNA downstream 27904 31018523 ~ 31018823 (-) False LOC120552646
TU303530 lncRNA downstream 49338 30996511 ~ 30997389 (-) True G224151
TU303497 lncRNA downstream 83285 30962281 ~ 30963442 (-) True G224133
TU303505 lncRNA upstream 7726 31105051 ~ 31120078 (-) False G224135
TU303499 lncRNA upstream 22359 31119684 ~ 31120078 (-) False G224135
TU303503 lncRNA upstream 22359 31119684 ~ 31120078 (-) False G224135
TU303580 lncRNA upstream 64352 31161677 ~ 31348325 (-) True G224184
TU303543 lncRNA upstream 65404 31162729 ~ 31171801 (-) True G224158
XM_039790832.1 mRNA downstream 26541 31017830 ~ 31020186 (-) False LOC120552646
XM_039790826.1 mRNA upstream 741 31098066 ~ 31102487 (-) True LOC120552642
XM_039789916.1 mRNA upstream 136429 31233754 ~ 31238960 (-) True LOC120552143
XM_039789917.1 mRNA upstream 201273 31298598 ~ 31328575 (-) True zbtb14
XM_039789570.1 mRNA upstream 233371 31330696 ~ 31337391 (-) True LOC120551970
XM_039790311.1 mRNA upstream 366287 31463612 ~ 31511341 (-) False epb41l3a
TU303394 other downstream 365145 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 553348 30475318 ~ 30493379 (-) False LOC120552614
TU303357 other downstream 580858 30461502 ~ 30465869 (-) False G224031
XR_005638047.1 other downstream 626180 30406956 ~ 30420547 (-) False LOC120552615
XR_005638048.1 other downstream 1189755 29851546 ~ 29856972 (-) False LOC120552628
TU303612 other upstream 113436 31210761 ~ 31211360 (-) True G224195
TU303705 other upstream 202698 31300023 ~ 31301032 (-) True G224245
TU303660 other upstream 237481 31334806 ~ 31337397 (-) False LOC120551970
TU303782 other upstream 518745 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 527971 31625296 ~ 31660992 (-) False G224289

Expression Profile