RNA id: TU303641


Basic Information

Item Value
RNA id TU303641
length 3579
lncRNA type sense_over
GC content 0.50
exon number 6
gene id epb41l3a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31460631 ~ 31511341 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGACCGTGGAGGCCGCTGTCAGACAGGCTaacgatgctaatgctaactctGCAGTTAGCCGCGGTGAGGCTAATAGCTGCACCCGGAGCCGCTCTGTTCTGGGATTTCATGACGACCAGAGCTCCAGCGATTCCGAGGAGGACGAGGGGGGGTGGAGCTTCGGGGAgaactccccccccccttctctgcCCCGCCCTGCCTCCCAGCGCTCAGCCAATCAGACGCAGCCATCCAACCACAGCGATGACGAGTCAGAACCTCTGCGGGAGGAGGTTCCAGTGATGAGGAAGACTCTCACATACGAAGCTCCAGGGGCGGACTCTGATCCTCCAGCAGGTTTGCTGCTCAGTTCTCAGATCTTCACCGCAGAAACCTCCAACACCACGACCACCACCCACATCACCAAGacaGTGAAAGGAGGAATTTCAGAAACCAGAATCGAGAAAAGAATCGTGATTTCTGGAGACACAGAAATTGACCATGACCAGgacTAAACCCAGAAGAACCtgctgcattctgggagttgtAGTCCAGACTAATCAGCCAACTGTTGGCAGTGTTTTCAGCAACACCCAGTGGACAATAAAGGAACTGaagatctacacacacacacacacacacatacacacagatacacacacgcacatatacacacacacagatacacacacccacacatatatacacacacacacacagatacacacacatacacacacacacatagatacacacacacacacagacacaaagacagacagactcacacacacacaaagacagacacacacacacacacacacaaagacacacactgtCTGACCGGGGGCGGGGCTTCAGAGCTCTTAGCATTAGTTTGATAGATTAGATAGTTGAAAGCTTCATGACACCATTTTCAGtcacatttaaaatgacaaactacacacagacagacagacagacaggcagacacagacagacagacacagagacagacagagactgacatacacagagacagacagacatacagacagacacacgtcTGTTGAAGCTGGCAAAGCCGACACGTGTATCAGGTGTGATCCAGGATCTACCAAACTTCACCTGCTGCTTTTACTTCCTACTTAAACAAGCcctgcccccacacacacacctgacatcTGATTGGTTGGCTCAGGTATATTTAACCCTGATTatgggacagagagacagcagcTTTATGAAACATTCAGTAAACAGTTTGCATCGTCTGGCTTTCCTATGTATTATTTATACCTTAATGTTTGGTCTGTTGTTCAGTGGCACCATCTGTCACAGCTTTAATTAATCAGATCATTTCGGCTTTGTTTCAGAGACATTAAGAACCAGTTCATTATTTGTTGAATTCTTGATTTAAGACATTTGAAAGTTCATCAGTTTCTGCCAGTTTTATCATCAGCGTACATGCAGACTTCTGCCTGTTTTTAGGGTCAATGGTAATTCATTTCCAAACACAGCACATAACAACGGGCCTAGACAGCTTCCCTGAGGAACTCCacagctgattggctgatgggtTTTACATCAGAGACACTTACAGTGAAGAACactttctgtttcctgttggTGATGCAAACTGTTTCCTGTTGTACACTTCACCGGACTGATGCAAACGGTCTCCTGTCTGAAATGTAAAATAGCATGAATGCTAGCACTGTAACCGCTCACTGTATAGCAGCTAAAACTCTATatttacccacaatgcaataGTAATGTGCCATTCTTTCACCTCGCCATGGAAAcctttatgaattattttattcACCTGTCGATGTGTAATTATTTTTGTGTCTTatgtctgtatttatttatttattgttgtgtGAATGTAATCCCAAATTGACCATGCCCCTGATAGCCACGTCCCTGGTGGCCACGCCCCTGGTGACCACGCCCCTGGTGGCCACGTCCCTTTCAGCCACGCACCTGTCAGCCACGTCCCTGATAGCCACACACCTGGTGGCAACGCCCCTGGTGGCCACGCCCCTGATAGCCACGCCCCTGTCAGCCACGCCCCTGGTGACCACGCCCCTGATAGCCACGCCCCTGGTGCCATGTTCACAGAatgtgtttttgaagttttcctgctggaagttagagagaaggcagctttaaggagcttcagcTTTGGCTTCACTTCTCAGACCAAGACACTTCGTCAGTTACTTAAAAAAGGTTTCTCAAAGTCGAGGATCCTTCCTCAACAGCACAGGTCCTTCCTCGGCAGGACTGGTCCTCCAGAGGTAGGACAGGTCCTCCAGAGATAGGACGGGTCCTCAAGAGGCAGGACTGGTCCTTCCTTGGCAAGACGGGTCCTCCAGGGGCAGGACTGGTCCTCCACAGGTAGGACTGGTCCTCCAGAGGCAGGACTGGTCCTCCACAGGTAGGACGGGTCCTCCACAGATACGACGGGTCCTTCCTCGGCAGGACGGGTCCTCCTAAGGCAGGACGGGTCCTCCAGAGGCAGGACTGGTCCTCCAGAGGCAGGACTGGTCCTCCAGAGGCAGAACGGGTCCTCCAGAGGCATGACTGATCCTCCAGAGGCAGGACTGGTCCTCCACTGGTCCCTGACTTTGGGGTCCAGCTGCTGAAGGATCTCTGACTTTGGGGATCAACCTCAGAAAGATCCCTGACTTTTGGGGTCAGCAGCTGAAGGATCCCTGACTTTGGGGTCCAGCAGCTGAAGGATCCCTGACTTTGGGGACCAGCAGCTAAAGGATCCCTGACTTTGGGGATCAGCAGCTGAAGGATCCCTGACTTTGGGGGTCAGTCTCTGAAGGATCCCTGACTTTGGGGCCCAGCAGCTGAAGGATCCCTGACTTTGGGGATCAGCAGCTGAAAGATCCCTGACTTTAGGGTCCAGCCTCTGAAGGATCCCTGACTTTGGGGTCCAGCAGCTAAAGGATCCCTGACTTTGGAGATCAGCAGCTGAAGGATCCCTGACTTTGGGGGTCAGTCTCTGAAGGATCCCTGACTTTGGGGTCCAGCAGCTAAAGGATCCCTGACTTTGGGGATCAGCAGCTGAAGGATGCCTGACTTTGGGGATCAGCAGCTGAAGGATCCCTGACTTTGGGGATCAGCAGTTGAAGGATGCCTGACTTTGGGGATCAGCAGCTAAAGGATCCCTGACTTTGGGGATCAGCAGCTGAAGGATGCCTGACTTTGGGGATCAGCAGCTAAAGGATCCCTGACTTTGGGGATCAGCAGCTGAAGGATGCCTGACTTTGGGGATCAGCAGCTGAAGGATCCCTGACTTTGGGGGTCAATCTCTGATGGATCCCTGACTTTGGGGTCCAGCAGCTAAAGGATCCCTGACTTTGGGGGTCAATCTCTGATGGATCCCTGACTTTGGGGTCCAGCAGCTAAAGGATCCCTGACTTTGGGGATCAGCAGCTGAAGGATCCCTGACTTTGGGGTCCAGCAGCTGAAGGATCCCTGACTTTGAGAAACCGCTTGTGTCTCCCTCTGGTGTCATGTTTTATTTCCTTCATGATGAATAAAATGTACTGAATGCAACTTTAAtcactaaactaaaataaaatgattaatgaATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303654 lncRNA downstream 1536 31453759 ~ 31459095 (-) False G224211
TU303653 lncRNA downstream 1536 31453932 ~ 31459095 (-) True G224211
TU303651 lncRNA downstream 1536 31456836 ~ 31459095 (-) False G224211
TU303650 lncRNA downstream 2307 31381743 ~ 31458324 (-) False G224211
TU303649 lncRNA downstream 2307 31453932 ~ 31458324 (-) False G224211
TU303735 lncRNA upstream 46212 31517849 ~ 31529836 (-) False G224270
TU303736 lncRNA upstream 48798 31520435 ~ 31529836 (-) False G224270
TU303738 lncRNA upstream 48798 31520435 ~ 31529836 (-) True G224270
TU303739 lncRNA upstream 49219 31520856 ~ 31521187 (-) True G224271
TU303737 lncRNA upstream 57705 31529342 ~ 31529836 (-) False G224270
XM_039789570.1 mRNA downstream 123240 31330696 ~ 31337391 (-) True LOC120551970
XM_039789917.1 mRNA downstream 132056 31298598 ~ 31328575 (-) True zbtb14
XM_039789916.1 mRNA downstream 221671 31233754 ~ 31238960 (-) True LOC120552143
XM_039790826.1 mRNA downstream 358144 31098066 ~ 31102487 (-) True LOC120552642
XM_039790835.1 mRNA downstream 440445 31018565 ~ 31020186 (-) False LOC120552646
TU303660 other downstream 123234 31334806 ~ 31337397 (-) False LOC120551970
TU303705 other downstream 159599 31300023 ~ 31301032 (-) True G224245
TU303612 other downstream 249271 31210761 ~ 31211360 (-) True G224195
TU303394 other downstream 779049 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 967252 30475318 ~ 30493379 (-) False LOC120552614
TU303782 other upstream 144433 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 153659 31625296 ~ 31660992 (-) False G224289
TU303789 other upstream 171258 31642895 ~ 31652166 (-) False G224289
TU303774 other upstream 174717 31646354 ~ 31681892 (-) False G224289
TU303790 other upstream 174717 31646354 ~ 31665371 (-) False G224289

Expression Profile