RNA id: XM_039790316.1


Basic Information

Item Value
RNA id XM_039790316.1
length 2778
RNA type mRNA
GC content 0.55
exon number 23
gene id epb41l3a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31460631 ~ 31511341 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTCGTGACGTCACCGCCCCGCCGCCGTGCGTTGTGTCGTAAAGAGAGAGATGacgtagtaaaaaaaaaagcgtcaGATACCGGGAGGAAGAGAGGCAGCGTCCTGCacgaggaggagagagagagagagagagagagacacacacagGTGAATCACCATGACGACAGAGCCAGGTACCCAGGAGGCAGAGTCTTTCCCTGAAGCCGCCGCCCACTCCACACCCAAACAGGGAGGGGGAAGCCACGCTCACAGCTCATTGGCCGAGGACTCGTCCAGTCCGCTGTCATCGAGCAGTCGCATCGCTCGCTCTCCAGCCAGAAACGCCCTGAGCTTCAGGACGATGCAAAGCCGCGTCACGCTGCTGGACGGCTCGCTGTTCACCTGCACCGTGGAGaAGCGAGCTCGTGGGTTTCAGCTGTTTAATAAAGTCTGTGAACACGTCAACCTGCTGGAGAGAGATTACTTCGCTCTGAGCTTCAGAGATGCTGACAACAACaagAACTGGTTGGATCCATCAAAGGAGATGAAGAAGCAGGTCCGAGGCGTTCCCTGGAACTTCTCGTTTAACGTAAAGTTTTACCCCCCCGACCCCGCCCAGCTGTCTGAGGACATCACCAGgtaCTTCCTGTGTCTCCAGCTCAGACAGGATGTCGTTTCTGGGCGGCTCCCCTGTTCCTTCGCGACTCACACCATCCTCGGCTCCTACACCGTCCAATCAGAGCTTGGAGACTACGACCCCGATGAGTGCGGTTCAGATTACGTCGCTGAAATCGGTTTTGCTCCGACTCAAACTAAAGAAATGGAGGAAAAGATCATGGAGCTGCACAAAACATACAGaGGAATGACTCCGGCCGAAGCAGAGATGAACTTCCTCGACAATGTGAAGAAACTTTCGATGTACGGAGTCGATCTTCATCACGCAACGgacTCGGAGGGCGTGGCCATCATGCTGGGTGTGTGCAGTAGCGGTCTGCTGGTCTACAGAGACCGACTGAGGATTAACAGATTCTCGTGGCCAAAGATCCTGAAGATCTCGTACAAAAGGAACAACTTCTACATCAAGATCCGCCCTGGGGAGTTTGACCAGTTTGAATCAACAATTGGTTTCAAGCTGCTGAACCACCGATCAGCTAAACGACTCTGGAAAGTCTGCGTGGAGCATCACTCCTTCTTCAGgctgATGTCTCCAGAGGAGACCCCGAAGAAGTTTCTGTCTCTGGGTTCAAAGTTTCGTTACAGCGGTCGGACTCAGATTCAGAGTCGCAGGGCGAGCGCTCAGATCTCCAGACCGGCGCCGAACTTCCCCCGAACCATCAGCAAGAGGAACATCTTGAGCCGCAGCCTGGACGGAGatATGGGTTCGGGGCTGTACGGAGCGTCTAAAGCCATCGCTATCAGTGACCTCATCACCACGGTAACGCCTGAGAGGATGGTGGACGAGAGGAGGGCTGAGCAAGTGGAGGAGGTGAAGCAAGAGGAGGAAAGGATGGAGGAAGATAAGGAGGAGGAgaccagagagacagagatttcTCAGCAGAGTCCGCCGACTCCTCAGAAACAGGACACCAAGACTGAGCTGACTGATACCGTGGTGGACGGAGAGCTGACAGCCACCGAGTCTGATCAGGATGAAGACCTGAAGACTCAAGAGACGTTGGGGAGTCCAGAGGAGGACCAGAAGCCTCAGAGCTCCATCAGTGCTCTCAGGCGCTCCTTCTTAGAGGATGCCGGAGGCAGCGGAGGCATGACGGAGTGGGACAAACGTCTCGCCTCATCGCCACTACGACGAGTCGACGACTCGCCGATGATCGAACCGCTGGAACCAGACGAGGAGGGCGGGATCACAAACAGGGCTCCtcctcagccaatcagagagaagAGCTACACCGTGGGGCGGAGCTACGACACCGCCTCTGGAAAGGTTGTCACCGTGACGACCGCAgacaacctgcaggtccgcGTCATCCCTCTGTCCAccactgatgatgtcatcaccgGGGGACCGCTGGTCACGATCCAGGAGGTGAAGACgccaacatcgccacccggtgcCTGGGACGTCAGCGGTGATGTCATCGGTGATGTCATCGGTGATGTCATCGGTGGGGGCGGAGCCTCCGTTCCTCCTAAAGTTGCTCTGGATGAGCTGAggctaagccccgccccctcagCGGGTCACCTGACTGGCAGGAAGTCGCCCGTCTCGCCCAGAGTGcctaAACCCACGTTTGATGAAATGTCTCCCGAGCTGACTGCTCTGCTGAACTCGGCCAGAGAACAACAAACCTTCAGAGAACACAATCTGCTGAAGacGTCGGAGACGGAGACGCTGTTCCTGTTGACGGAGCCGTGTGACCCCGGCCAGCCTCAGGAGGTTCCAGTGATGAGGAAGACTCTCACATACGAAGCTCCAGGGGCGGACTCTGATCCTCCAGCAGGTTTGCTGCTCAGTTCTCAGATCTTCACCGCAGAAACCTCCAACACCACGACCACCACCCACATCACCAAGacaGTGAAAGGAGGAATTTCAGAAACCAGAATCGAGAAAAGAATCGTGATTTCTGGAGACACAGAAATTGACCATGACCAGgacTAAACCCAGAAGAACCtgctgcattctgggagttgtAGTCCAGACTAATCAGCCAACTGTTGGCAGTGTTTTCAGCAACACCCAGTGGACAATAAAGGAACTGaagatctacacacacacacacacacacatacacacagatacacacacgcacatatacacacacacagatacacacaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303654 lncRNA downstream 4518 31453759 ~ 31459095 (-) False G224211
TU303653 lncRNA downstream 4518 31453932 ~ 31459095 (-) True G224211
TU303651 lncRNA downstream 4518 31456836 ~ 31459095 (-) False G224211
TU303650 lncRNA downstream 5289 31381743 ~ 31458324 (-) False G224211
TU303649 lncRNA downstream 5289 31453932 ~ 31458324 (-) False G224211
TU303735 lncRNA upstream 10444 31517849 ~ 31529836 (-) False G224270
TU303736 lncRNA upstream 13030 31520435 ~ 31529836 (-) False G224270
TU303738 lncRNA upstream 13030 31520435 ~ 31529836 (-) True G224270
TU303739 lncRNA upstream 13451 31520856 ~ 31521187 (-) True G224271
TU303737 lncRNA upstream 21937 31529342 ~ 31529836 (-) False G224270
XM_039789570.1 mRNA downstream 126222 31330696 ~ 31337391 (-) True LOC120551970
XM_039789917.1 mRNA downstream 135038 31298598 ~ 31328575 (-) True zbtb14
XM_039789916.1 mRNA downstream 224653 31233754 ~ 31238960 (-) True LOC120552143
XM_039790826.1 mRNA downstream 361126 31098066 ~ 31102487 (-) True LOC120552642
XM_039790835.1 mRNA downstream 443427 31018565 ~ 31020186 (-) False LOC120552646
TU303660 other downstream 126216 31334806 ~ 31337397 (-) False LOC120551970
TU303705 other downstream 162581 31300023 ~ 31301032 (-) True G224245
TU303612 other downstream 252253 31210761 ~ 31211360 (-) True G224195
TU303394 other downstream 782031 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 970234 30475318 ~ 30493379 (-) False LOC120552614
TU303782 other upstream 108665 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 117891 31625296 ~ 31660992 (-) False G224289
TU303789 other upstream 135490 31642895 ~ 31652166 (-) False G224289
TU303774 other upstream 138949 31646354 ~ 31681892 (-) False G224289
TU303790 other upstream 138949 31646354 ~ 31665371 (-) False G224289

Expression Profile