RNA id: XR_005638027.1


Basic Information

Item Value
RNA id XR_005638027.1
length 176
lncRNA type intronic
GC content 0.56
exon number 3
gene id LOC120552533
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31284694 ~ 31312314 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGCAAGAGCTTCCCTGACAGAGCCGGCTCAGGAAACACGAGAAGCTACACTCAGCGGAGCGGCCGTTCGTCTGTGAGATCTGCACCAAAGCTTTCACCACCCACGCTCACCttaaagAACACCTGAAGATCCACACGGGTCAAAGCCCTACAGGTGTGACGCTTGTGGGAAATC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303674 lncRNA downstream 17519 31256108 ~ 31283580 (-) True G224226
TU303583 lncRNA downstream 37536 31244009 ~ 31263563 (-) False G224184
TU303581 lncRNA downstream 42620 31255516 ~ 31258479 (-) False G224184
TU303614 lncRNA downstream 89739 31210761 ~ 31211360 (-) False G224195
TU303597 lncRNA downstream 92308 31207908 ~ 31208791 (-) False G224194
TU303676 lncRNA upstream 10276 31313315 ~ 31367136 (-) True G224228
TU303708 lncRNA upstream 11570 31314609 ~ 31316991 (-) True G224248
TU303670 lncRNA upstream 21955 31324994 ~ 31326213 (-) True G224222
TU303675 lncRNA upstream 23650 31326689 ~ 31370100 (-) True G224227
TU303664 lncRNA upstream 23984 31327023 ~ 31405155 (-) True G224216
XM_039789916.1 mRNA downstream 62139 31233754 ~ 31238960 (-) True LOC120552143
XM_039790826.1 mRNA downstream 198612 31098066 ~ 31102487 (-) True LOC120552642
XM_039790830.1 mRNA downstream 280913 31017830 ~ 31020186 (-) False LOC120552646
XM_039789570.1 mRNA upstream 27657 31330696 ~ 31337391 (-) True LOC120551970
XM_039790311.1 mRNA upstream 160573 31463612 ~ 31511341 (-) False epb41l3a
XM_039790310.1 mRNA upstream 160573 31463612 ~ 31507409 (-) False epb41l3a
XM_039790312.1 mRNA upstream 160573 31463612 ~ 31507408 (-) False epb41l3a
XM_039790313.1 mRNA upstream 160574 31463613 ~ 31507406 (-) False epb41l3a
TU303705 other downstream 67 31300023 ~ 31301032 (-) True G224245
TU303612 other downstream 89739 31210761 ~ 31211360 (-) True G224195
TU303394 other downstream 619517 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 807720 30475318 ~ 30493379 (-) False LOC120552614
TU303357 other downstream 835230 30461502 ~ 30465869 (-) False G224031
TU303660 other upstream 31767 31334806 ~ 31337397 (-) False LOC120551970
TU303782 other upstream 313031 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 322257 31625296 ~ 31660992 (-) False G224289
TU303789 other upstream 339856 31642895 ~ 31652166 (-) False G224289
TU303774 other upstream 343315 31646354 ~ 31681892 (-) False G224289

Expression Profile