RNA id: XM_039789468.1


Basic Information

Item Value
RNA id XM_039789468.1
length 1615
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC120551896
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25199062 ~ 25229544 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTTTCTCGGGGAGAAGAGCAAGTTCCAGTTTGGAGGGTGCAGCCATCCCTGTGGGCATCGATGTGCAGGTGGAGAGCATCGACAGCATCTCAGAGGTCAACATGGACTTCACCATGACTCTGTACCTGCGGCACTACTGGAAAGACGAGCGGCTGGCCTTTCCGTCCCGAAACAATCAGAGCAGGACGTTTGACTCGAGGCTGGTGAAGAAGATCTGGGTTCCTGACGTCTTCTTCGTCCACTCCAAGCGCTCCTTCATCCACGACACCACCATGGAGAACATCATGCTGCGGGTTTACCCCGACGGAAAGATCCTGTACAGCGTCAGgGTCACGGTGACGGCTCTCTGCTCGATGGACTTCAGCAGCTTTCCTCTGGACACACAGAACTGCTCGCTGGAGCTGGAGAgctatgcATATAATGAGAACGACCTGATGCTTTACTGGAAGAATGGGAACGACTCTCTGAGGACGGATGAGATCGTCTTGTCTCAGTTCTTCATTAAGCATTTCCACGCCTCCAGTGGCCTGGCTTTCTACAGCAgcaccgGTTGGTACAACCGTCTGTTCATTAACTTCATCCTGCGGAGGCACATCTTCTTCTTCATGCTGCAGACGTACTTTCCCACCATGCTGATGGTCGTCCTGTCCTGGGTCTCTTTCTGGATCGACCGGAGGGCCGTCCCTGCCCGTGTCTCTCTGGGTATAACCACGGTGCTCACGATGTCCACCATCATCACCGGAGTGTCCTCCTCCATGCCTCAGGTATCGTACGTGAAAGCGGTGGACATCTACCTGTGGACCAGCTTCCTGTTTGTCTTCCTGTCTGTGATCGAATACGCAGCAGTGAACTACTGCACCACTCTGGAGGAGATGAGGAAGATGAAGAGGGGGAAGATCCCATCAACCTTCAACGCCAGCCAGGCGATGGCCTATGACGGCTGTTTCCACGACAACGACATTGAGCTGACTCCATTCTCCGGCCTAGCGCCCACCGGGTCCTCTGGCCCCCTCACCACGCCGACCCAGGCCCTGGACAACCGGCCCACGGAGGGGACTCGGCTGCGCCGGCAGTGGTCTCTGCGTCAAAACGTGGACCTGTTTGTCAGCAACAGCTACGTGATCGACTCGTACTCCCGTGTGGCCTTCCCGATGTCCTACCTGCTCTTTAACGTCGTCTACTGGAGCCTGTACTCCTGAATCAGCACCGCAAACTCTCGGTGAACTCTGGTGCACTTTACTAAGCCCAAGTGTTGAGTCAGAGAGCATGCTGGGGGGATCCCTCTTCTCCACAGAGCTCCACAGACACTTTACTGAATGAACTCTTGATCACAGGAGAGCCCCTTCAGCGCCGGCTTCATCACTTTATAAGAGAGATAAAAGCACTCCAGTTCCTCAGAGTAGAAACTTTTAATTGTGCACAATTTCACCCTGACATTTGTCTCATGGGAGCGGGTTGAATCCTGAGACTTAGGAAGTAATGGATCCCAATGAGCCACAGAGAAATACGAAATTAGGATAAAATTTATGTGaaaatgttcttcctttttttttttatcttccttTTTTCGTATAAAATCATGAAAAAATCATATCATATCACATTTGGGGGCA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302038 lncRNA downstream 32 25198346 ~ 25199030 (-) True G223193
TU302017 lncRNA downstream 164698 25034076 ~ 25034364 (-) True G223184
TU302016 lncRNA downstream 164698 25034113 ~ 25034364 (-) False G223184
TU301975 lncRNA downstream 175148 24996626 ~ 25023914 (-) True G223155
TU302048 lncRNA upstream 28649 25257666 ~ 25333390 (-) True G223202
XR_005638001.1 lncRNA upstream 66442 25295459 ~ 25300407 (-) True LOC120552440
XR_005638008.1 lncRNA upstream 80242 25309259 ~ 25313802 (-) True LOC120552444
TU302061 lncRNA upstream 87595 25316612 ~ 25385621 (-) True G223206
XR_005638002.1 lncRNA upstream 110235 25339252 ~ 25345952 (-) False LOC120552441
XM_039790538.1 mRNA downstream 1529 25182212 ~ 25197533 (-) True LOC120552454
XM_039790541.1 mRNA downstream 3784 25182212 ~ 25195278 (-) False LOC120552454
XM_039790540.1 mRNA downstream 4835 25182212 ~ 25194227 (-) False LOC120552454
XM_039790085.1 mRNA downstream 19494 25092577 ~ 25179568 (-) False LOC120552233
XM_039790083.1 mRNA downstream 19494 25092577 ~ 25179568 (-) True LOC120552233
XM_039790459.1 mRNA upstream 185867 25414884 ~ 25427197 (-) False LOC120552403
XM_039790458.1 mRNA upstream 185867 25414884 ~ 25427197 (-) False LOC120552403
XM_039790457.1 mRNA upstream 185867 25414884 ~ 25427197 (-) True LOC120552403
XM_039790462.1 mRNA upstream 200221 25429238 ~ 25437142 (-) True chrnd
XM_039790460.1 mRNA upstream 210137 25439154 ~ 25461021 (-) True cip2a
TU302014 other downstream 112354 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 231072 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 2980696 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2981513 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 3189974 21990017 ~ 22009088 (-) True tfr1b
TU302146 other upstream 327456 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 501739 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 599074 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 599074 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 754577 25983594 ~ 25993497 (-) False G223331

Expression Profile