RNA id: XM_039789519.1


Basic Information

Item Value
RNA id XM_039789519.1
length 4891
RNA type mRNA
GC content 0.47
exon number 30
gene id mrc1a
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18741999 ~ 18754600 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctagcACACAGCAGACTCCTTCTCTCATGACTGGAAAACTCTCCTATAACCTCATCCAGCACTGAGTGCAAACCACACACTAAGGATAATGCTACCCTGTTCAAATGTCGCTGTGGTCCTCTGTCTCCTGCAAGTCCTCTGCATTACTGCAGACATAGACAGTGGCTCCTTCCTGATCTTCAACGAGAACCACAACAAGTGCATAAAGGTGGAGAGTGCCACCTCCATCACGGTGGCTCCCTGTGATCCTCATGCCAAAGCGCAGCAGTTTCGTTGGGCCTCCGAATCGCGCATCCTCAGTCTGTCCCTCAAGCTCTGTCTGGGGGCCACAGAGATTAAAGACTGGGTGAAGGTGCTCCTCTTTGAATGTGATGAGAATAGTGAGCTCCAACACTGGCAGTGCAAGAATGAGACCCTCTTTGGCCTAAAAGACCAGGACCTGCACTTAAACTGGGGCAACCGCAATGAGAGGAACATAATGATCTACAAAGGGGTAGGGCTCTGGAGTCGCTGGAGGATATTTGGCACCCGGGGTGACCTTTGTTCAAAGGGGTTTCAAGAGGTTTTCACGATAGGGGGGAATGCCTTTGGAGGCCCCTGTCAGTTCCCATTTAAATTTGGGGAGAAGTGGTTCGCTGAATGCACAAAGGAAGGTCGCTCAGATGGACAACTGTGGTGTGCAACAGAGAGAGATTACAATAAAGTCAAAAAGTGGGGCTTTTGTCCCACCGGAGTATCCTCAGGTTGGGACACTGACCCGGTCACAGGGGTTCAGTATCAGAGGAACGCACAGTCAGCGTTGACCTGGCATCAGGCCAGGAAGAGCTGCCAGCAGCAGGGAGCCGACCTTCTCAGCATTGTTGAGCTACATGAGCTGTCATACATTTCAGGGTTGACACATGCGTTGGGAACATCTCTGTGGATTGGACTGAACAGCTTGGATTTTGAGAGTGGATGGCAGTGGAGCAACGGAAACCCGTTCAGATATTTAAACTGGGCCCCAGGCCATCCCTCGTCAGAGCCCGGGCTCACCTGTGCAACCCTAAATGCTGCAAAAGCCTCAAAATGGGAGAGCAACGCATGCACCAAGAAACTTGGTTACATTTGTCGCAAAGGAAACTCTACCAGTCTGCCTCCACCACCAAACAAAGACCAGCCCAGCTTCTGTCCCAGTCACTGGGTTCCATATGCAGGTAACTGTTACTACCTGCAGAGGAGTAAAAAGATGTGGAAGGACGCTTTGGCTGCATGTCACAAAGAGGGTGCAGACTTGGCCAGCATAAGCAGTATAGAAGAGCAGAGCTTCATAATATCTCAGTCTGGATACTTGTCGACAGATGTGCTCTGGATTGGCTTGAATGATCAGAGGAACCAGATGCTGTTTGAATGGTCCGATCACTCCCACGTTACCTTCACCCAGTGGCAGACTGGTGAGCCATCTCATGCCACCAACCTCCAGGAAGACTGTGTCCTCATCAGAGGAAAGGACGGGAGGTGGGCTGACCACATGTGTGAGAAGACGTATGGATACATCTGTAAGAAGAAGGCCTCCACTAAACCACCTGAAGGCACCCAAGAGGAAGCCAACCCGGGATGCAAACTTGGCTCAATCAGGTTTGGTTCTTATTGTTACAACATTGGATCTGAGACAAAAACCTTTGATGAGGCAAAGCTGGCATGCTCAGAGGCTGGCGCTAACGTGGTGGATGTGGCTGATAGATATGAGAATGCCTTCTTGGTCAGTTTGGTGGGTATGAGACCAGAGAAGTATTTCTGGACAGGTTTTTCCAACACAGACGACATAAACACTTTTAAGTGGACCACCAGAAGAAAAGTCACATTCACTCATTTCAATGTGGGCATGCCAGACAGACAACAAGGATGTGTTGCCATGACAACTGGGATTTTTGCTGGATTATGGGATGTTGTCAGCTGCAGCAACAAGGAGAAGTATATCTGCAAGAAACAAGCAGAGGGTGTTCATGTGACAACAGTCCCACCCACCACCCCGGCCCTGAGCTGTGAGTCTGGGTGGACCCCCGCTGCCAAGAGGAACGTCTGCTACAAAATTTACAAAAAGTCAGCGAGTCTTAGGAAGACTTGGCATGAAGCGAAGGACTTCTGCAAGGCCATTGGTGGAGACCTGATGAGCATACACAGTATGCAGGACCTGAGCAACGCTCCGTTTCATTCCTCTGAACCAGTCTGGATTGGCCTCAGCCTTGGTACCAACGCGGGTTTTGAATGGTCCGATGGGTCGCCTTTCGGCTTTGAGAACTGGAGCTTTGGGGAACCAAACAACTACAATGACAACGAACACTGTGCAGAAGTCCACTTTTACTACGGGCGGCACTGGAATGATAGGCACTGTGAATCCTACAGTGACTGGATCTGCCAGATACGCAAAGGTGTGACCCCCAAACCTGAGCCTGTCATAGTTGCACCAGTATACAACACCACAGAAGATGGCTGGATAATATACAATGACACACAGTATTTCATCAACAATGACAAGTTAGACATGGAAGCTGCTAGAGCCTTCTGCAAAAAGAACTTTGGTGAACTTGTGGTCATCACTGGGGAGAGTGAGAGAAGGTTCCTATGGAAACAGATAGTGAAAGGCACAGAAGGACAGTACTACATTGGCCTGACAGTGAATTTGGATAAGTCATTTAGCTGGCTGGATGGCACCCCTGTATCATACACCGCATGGGAACAGAATGAGCCCAACTTTGCTAATAATGATGAAAACTGTGTGACTTTATACAAGAGCATGGGGTACTGGAATGATATTAACTGTGGTATGGAGCTTCCTTCTATTTGCAAAAGAAGCAGTAATTTTATTAATACAACAATGGCCCCAACCACTATTCCTAAGGGAGGATGCGCACCAGAGTGGCTCGCTTTCCAAGGAAAGTGCTACAAAATAGTTGTGGGAGATGACAAGAAGAACTGGCAGGAAGCCAGGACGTACTGCTTAAACCAGGGAGGAAATCTGGTTTCTATCGTCAATGAGAGAGTGCAAGcATTCCTTACAACGCAGATGCTGAGATACGAAGACGACTTCTGGATCGGCATGAATGATGTCAACTGGGAGATGCACTTTGTGTGGACGGATGGCAAAGGCATTTCATACACCAACTGGGCAAAAGGGCATCCAACAACAGTGCCTAATGGACGTTATTCATTTATGTCTGAGTCATTTGACTGTGTGGTGATGGTGGGCAGCATCACAAAAATAAAAGGATTCTGGAAGGTGGAAGACTGTGACTCCAAACATGGCTTCATCTGTAAAAGAAACATTGATTCTCAGATTGTAGTCCCAGCCACAACTGTGTTACCAAAGGCTTTCTACAAACTTGGCAATGACTCCTACAAACTGGTGGCCCAGAAGATGAGATGGGATGAGGCGAGGAGGCAGTGCCAAGCAGACGATGCAGATCTGGCCAGTATCCTGAACCCCGTCACCCAGGCATACATCACCTTGCAGATTTCCAAGCACAATGAGCCTGTGTGGATCGGCCTCAACAGCAATGTGactgGTGGGCGGTTCCAGTGGGTCGATAACTGGCTGCTGTCTTATACCAAATGGGGCGCAAATGAACCTAAAAACAACTTTGGCTGTGTGTATATGGACGTGGACAGAACATGGAAGACTGCACCATGCACCGATACCTTCTATTCCCTTTGCAAGAGGTCACCAGACATAGCACCCACAGAGCCCCCACAACTCCCTGGAAACTGTCCAGAACCAAAGAAACGGAAAACCTGGATACCTTTCAGAGGCCATTGTTATTACTTCCTCAGCTCATTGGTCGACAACTGGGCCCATGCCTCAGTTGAATGTCTGAAAATGGGTGCTTCTCTGGTGAGTATTGAGGACCCTCAGGAGAGCCTGTTCATACAACAGAACCTGGAGCTTCTGCAGGACGGTGCCAAGTCCTTCTGGATCGGCCTTTACAAGACTCATGAAGGTGAGTGGATGTGGATTGATAACAGTGTTGTGGACTACGCCAACTGGAAAACGGGGATGCcaaagtcagaatcatgtgtggACATCGATTCTGACAGTGGACAGTGGAGTACAAACAGCTGCAGCAGATACAGGTCTTACATCTGCAAAACAGCCAAAGTTATTACACCTACAGAAAAGCCCCCATCTGTTGCCCACGTCGTTAAAGAAGCTTCTCATGGGTCTGCTGGCATCACTGTGGCTGTAGTGCTAGTTGTAATCGCCGTAGTTGGACTCGGTGCCTTCCTCCTTTTCCGTAAACGGATAACCACCCCTGTCTTGGGAGAAAGCACCTTTGACAACAAGTTATACTTCAACAATCCAATCCGAGCCCATGTAGACACCAAGGGTCTGGTGGCCAACATAGAGCAGAATGAACAAGCATAGAAAGACTTGATATCAGTGGTAATCAGCACTGTGAACATGATATGATTATGGTTTCATACTTTATTTTGGATCACTTAACTGGGAACTGAATCTCCATCAAACCCTGTAGTGTTTTACCATTTAAAGAGGACAGGATAATGATTcataattattatataataattcatACAACCACTGGCACTGCACTAAGTGAATTAAGGAGAAGATAATATAAGTGAAAATTTTACAACACATTTTACATGATTATGTAATTTGTGAAATGtgtacattttatgttttacttatCCACCAATCAGATTAAGATTTTGAACATTTGTAGCGCAAGCTCCAGTTAAAAATCAAGAGGGTGAAGATTATTCACACAATTATCAGATTTTTCTCAACTGGATTTCTTGTTATTATTCTCCATGGGCTGCTCATCAGCCTATTTCTGGCTTACAACATTGTAAATAGATGCTCAATAAAagaaatgaaacaaacaaaactgaat

Function

GO: NA

KEGG:

id description
K06560 MRC, CD206, CD280; mannose receptor, C type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298879 lncRNA downstream 1383 18740417 ~ 18740616 (-) True G220860
TU298818 lncRNA downstream 44029 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA downstream 118614 18622691 ~ 18623385 (-) True G220839
TU298776 lncRNA downstream 163922 18472125 ~ 18578077 (-) False LOC120552692
XR_005638063.1 lncRNA downstream 244210 18472135 ~ 18497789 (-) True LOC120552692
TU298903 lncRNA upstream 18381 18772981 ~ 18773497 (-) False LOC120552352
TU298915 lncRNA upstream 61306 18815906 ~ 18816378 (-) True G220888
TU298921 lncRNA upstream 75151 18829751 ~ 18829985 (-) True G220893
TU299030 lncRNA upstream 285665 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA upstream 285665 19040265 ~ 19043216 (-) False G220972
XM_039789516.1 mRNA downstream 1913 18731524 ~ 18740086 (-) True LOC120551919
XM_039789517.1 mRNA downstream 6420 18731524 ~ 18735579 (-) False LOC120551919
XM_039789500.1 mRNA downstream 13400 18661228 ~ 18728599 (-) False cacnb2a
XM_039789503.1 mRNA downstream 42145 18659277 ~ 18699854 (-) False cacnb2a
XM_039789520.1 mRNA upstream 1753 18756353 ~ 18762846 (-) True LOC120551921
XM_039789521.1 mRNA upstream 1753 18756353 ~ 18762648 (-) False LOC120551921
XM_039790345.1 mRNA upstream 18377 18772977 ~ 18810944 (-) True LOC120552352
XM_039789988.1 mRNA upstream 67382 18821982 ~ 18826882 (-) True enosf1
XM_039789989.1 mRNA upstream 76987 18831587 ~ 18853616 (-) True LOC120552191
TU298817 other downstream 110524 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 117201 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 1866699 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1946875 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2457264 16266303 ~ 16284735 (-) False drd3
TU298948 other upstream 184399 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 560991 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2081697 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 3235417 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3448183 22202783 ~ 22218366 (-) False smpx

Expression Profile