RNA id: XM_039789520.1


Basic Information

Item Value
RNA id XM_039789520.1
length 2041
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120551921
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18756353 ~ 18762846 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCCACAGCTACCTGTAGCCTAACCCCCGCTGCAATTTGATTGGCTGATTGCCAAGTGCTGTGGACGTCATTTTCAGGTAGTTGTTGGAGTTTCTGCGGTCACCATCGACGTGGATTATTTTCTACAgcaaaatgtgtctgttttttttgaagaaaaactTGAGATGAAACGCCTCGGTGCCCACCATCCGCCGGATATTGTTATAAACCAAACATCTGctCCACAGCATGGGCTCGGGGAGGACGCTGAAGTTCGCCCTGTGCGAGGTGCTGCAGTTTGCAGGCCTGTGCGTGCCACTCTTCATCGTCATGCAGAGGTTCGCCGTCATCGTAGCAAAGGTCAAAACGTCGGCGCGGCCCCCTGGAGACGGCAGCACGGCCTACTGGTTGATCGTGGCCTCCTCCATTGCCTATGTCACCTCCACCGCCCTGCTGGTCTGGGTACCCATGAAGTATATGGTCTTTGCAAAGAAGAAGTTTCTCATTGGGAGGAAGAAGTGGAGGCCTGTGACGCTCGTATATGTGATCCTGTCCACATTGCCCTGCTTTGCCTTTCTCATCGCCAGCTCTGAGGTTCAGATAAATAACCACATGACACATGATACGTTCACGGAGCTCCCTGTATCACTAGTGCTCTTCTCTCTCATCTGTATTGACGTTGTGGAAAGGATACGACACTGCAGACTGACCGGCCAGGGTAATGACATGGAGAGAGATGCTGACATCCCCTCCACTGTCCTCACACATGTGGAACAGGTAACACCAGTCACACCTATCACTCCAGCTGCATCGGGGCCAGCTGTGCCCGGGCAAGCTAGGCCAAATCCTATGCCACCCGGAGCAAACCAGCACAATGACAGGAACCAGAATGGAGCAGGGGCTCGACCAGAGACCAACGGCACAGTCCCTGGGATACCAGGTAATCCTGGGAGACCATTTAGCATCTCTGGATTGAGCTCACAATCGGCGAGCACCACAGCGTACCGCATATCTCCGTACTCCTACACGGGTCCACTGAGATTCCTGTGTGCCAGCGATGCCCGAGCGGACGTATTTGTGGACAGCTTTATGTTCTGGATGGACACAGTAGAGATGGTGAGGGTAGCAGGACATCCCCTTGTCTACTACTCAGGCTGGGTGTTCCCCATCTACATCTTCAGCTACCTGTCTTGCCTGCGGGTGGTGGTCATGCCCCACAGCCCCCTGCTTCCCTCACTAGGAGTGGCCGTGCAGGACTTTCCCTTCTTCTTTGTGCGTGTTGGCCTCATTGCCTTCTTTGGCTTTGTCACACCCCTCCTCTATCTGATGAAGAACCTGCTGGTCTGCCTAGCCTTTGTCTATTTCAACTTCATGACCAGGCTGAGGATCTTCAACACAGAGAGGATGTTCTTTTGAGACCAGCACTTCAGGCAAAGACAGAGCACATTAAAACGTATATTACAAACAGTAGGTTGGCACAAAGGATGCAAAGATTCAGGAGGAGGTCGCACGAGCTGACTTCATAAGTTCAAACTTAGTTATAACTTAAGTGTTTACTAAAGGGCAGATTCTCTAATATATTGAGATTTGTTCCTAAATATTCACATCCAGTAACTGCCAGGTGTAACTGTTACAGCTAACTGAACCAACTAATAAAAATAACGTTAGTCGACACAgaagagatattttgttaaaatgcATGATGGTACTTTTTACAGGCCAAAAGGGAGCTCTTAGGCAATGTTTTCCCATTTAAGGTGTCAAATGACTGTTGTGTTATGTATTATTTACCTTTATGTTCaagcatacttttttttttttaccctcacTCTCACCAAGCATGGCACTTTGGGAATGTACCTGTAATGTAATTTGAGAGTTTATAGCAGATTTCTTTTCTACCATTATAAAGTGCAGTGAATATGTAAAAGCATAAATACATGTTGTTTAGATTAGGTTTTTCTTTGCTAAGTTATATTtacaaaagagaaacaaagtgtgagTTTGTATCATTGATACATATATTTTGGTAAGATTAATAAAGACAACCATTTAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298879 lncRNA downstream 15737 18740417 ~ 18740616 (-) True G220860
TU298818 lncRNA downstream 58383 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA downstream 132968 18622691 ~ 18623385 (-) True G220839
TU298776 lncRNA downstream 178276 18472125 ~ 18578077 (-) False LOC120552692
TU298903 lncRNA upstream 10135 18772981 ~ 18773497 (-) False LOC120552352
TU298915 lncRNA upstream 53060 18815906 ~ 18816378 (-) True G220888
TU298921 lncRNA upstream 66905 18829751 ~ 18829985 (-) True G220893
TU299030 lncRNA upstream 277419 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA upstream 277419 19040265 ~ 19043216 (-) False G220972
XM_039789519.1 mRNA downstream 1753 18741999 ~ 18754600 (-) True mrc1a
XM_039789516.1 mRNA downstream 16267 18731524 ~ 18740086 (-) True LOC120551919
XM_039789517.1 mRNA downstream 20774 18731524 ~ 18735579 (-) False LOC120551919
XM_039789500.1 mRNA downstream 27754 18661228 ~ 18728599 (-) False cacnb2a
XM_039789510.1 mRNA downstream 62378 18659277 ~ 18693975 (-) False cacnb2a
XM_039790345.1 mRNA upstream 10131 18772977 ~ 18810944 (-) True LOC120552352
XM_039789988.1 mRNA upstream 59136 18821982 ~ 18826882 (-) True enosf1
XM_039789989.1 mRNA upstream 68741 18831587 ~ 18853616 (-) True LOC120552191
XM_039789990.1 mRNA upstream 68741 18831587 ~ 18847246 (-) False LOC120552191
XM_039790256.1 mRNA upstream 176067 18938913 ~ 18949495 (-) True mettl4
TU298817 other downstream 124878 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 131555 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 1881053 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1961229 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2471618 16266303 ~ 16284735 (-) False drd3
TU298948 other upstream 176153 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 552745 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2073451 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 3227171 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3439937 22202783 ~ 22218366 (-) False smpx

Expression Profile