RNA id: XM_039789531.1


Basic Information

Item Value
RNA id XM_039789531.1
length 4811
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC120551932
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22195236 ~ 22200046 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTTCCTATCACGGTGTCACATGTGACAGAGCAGAACAACAAACACAGATGGAGGGACTTCGACTGAGGACACGCACCTtcctctctgttcctctctcctgtcttttCCCATCATTTCCTGCTCTTTGCTTTCAGCAACTTATTACCCTGTTCTCTTACTAATGTCGGATTCTCTTTCTGTCAAAAGTTCTTTAGTGCAGCTTGTCGGctacgtctttttttttttgacgagACTCATCGCTGCTTTGCCTGTGCTTTCTGCTTTTAATGTTTCTTCCTCTAACTTCCCTCTCACTTCTGCTTCATCGCACCTTCCTGACTAAGCTTTTTCTTAGCAACTAGTCCTCTTTTTGACTATTTCTCCGTAGgtttcgctctctctctctctctctctcactttctctctctcaatctcttATCCTCTCACCTACTATCTTTTGGATGGATAGTTACTCCCTACTCTACAGTTCCTCCCACAGAACCAGGCTTCTCTCCGGCTTCCAGCGTCTGCGCTCTCAGAGAAACATGTGTGATGTCGTCCTAGAGGCCGGCGGTGTGTCTTTTCCTTGTCATCGCGCCCTTTTGGCCAGCTCCAGCGAGTATTTTTGGGCTCTGTTTGGAGAGACTACCGCGGAGAGATTAGCTGGCTCCATCAGCCTCCCGGCGCTAACACCTGAGGGTTTAAACGTCATTCTGGACTTCCTGTATTCGGGCTGGCTCAATGTATCACCGCCAACACTTCCTGTTGTCTTGGAGGCAGCCAGGTACTTGCAGGTGGAGACGGCTGTGTCAATATGCGAGCGCTTTCTGACTGATGGTTTAAACGCTGAGAATTGCTGTTGCTATGCTAACCTGGCCGAGCATCACGCCCTCTTAGACGCACTTAAAGCTGCCAATGAAACCATCGCTATGGAGATGGGGACACTGCTGCAGGAACGCAGGGATGACCTTCTCGGGCTGAATATCCAAACGATGATGGCGGTGCTCGATGCTGACGAAATACCTGGTGTCAAAGAGGTGGAGCTTATAAAGCTGGCTCTGGATTGGCTGGATGAGAATGGACCCCTCCCTCTGCTGAAATCAAATCTTCTGCTGAGTCGTCTGCGCTTCGGATTGGTCGCCCCCTCTGACCTGACCAATATGAACCACGCCCACAAAGCCATGGCCACACCTCTCATCAGAAGTCAACTTACCCGGGCGTTGGAGTACCACAGGCTGGGTTCTGCTCAGCCAATCAGACAGAGCAAACAGTCCACGCTCAGAGCGTCGCCCAATCGGGTGCTACTTGTGGGTGGAGGATCCAGCCCTGATTGGCCGGAACAGCAAATGTTGGCGTTTGATCCTACAAGTAGGAAGTTTTCATCCCTGAGCACCAGCGTCCCGCTGCGACTGAGAAATCACTGTGCGTGCTCAGTGGGTGGTTTCCTCTTCGTGGTCGGAGGAGAAGAAGTGAAAGAGGGAGACGAGGATGGGAAAAAGTCAGTCACCGTGGCGACGTCCAACCAGGTGTGGCGCTACGATCCTCGCTTCGTCTGCTGGGAGACGGTGGAGTCGATGCTGGAGAGGCGGGCGCGGTTCACCTGCTGCGTCGTGGAGGATGCCATTTACGCCATCGGGGGACGACGCACAGGACCAGAcggcaacacacacacctcggtAGCTTCTGTTGAGTTTTACGACATGACCACAGGAGCGTGGAGGAGAGGAGCAACGATGCCTCGCCCCCTTTATGGCCATGCTTGTGCTGTGCTTGACAACAGCATCTACGTGTCAGGTGGTGTCCCGGGCAACCAGGGCGGCAGTAACCCTATTGATAACCAGGATGACCACAGAGCGAGCAGCAGAGAAGTCTTGTTCTGGGACCTCAAAGGCCGAGTCTGGGAAAAGCGAGCGTCCATGTCCATCGCCAGGTTCAGCCATCGCCTGGCAACCGCCAACGGCCACATCTACGCCCTGTTGGGAATGTACGAGCCTTTCTGCGATATCGAACAATACGACCCGCAGTCAGACCACTGGACGCGCCTTCGACCGCTTCTCATTGGCTCCTTCAACTACGGGATGGTGTCAACGCCGTCTGGGAATCTGCTGGTGTTTGGAGGGAGGAGATGGAGCAACGGACAGGAGGTGATAGTGAAGAGCGTGTTGGAGTACGATACAAAGAAAGATCGCTGGAGAGAGATCTGCCAGCTCCCCAGACCTCTCACTGGGACCGAGTGCACACTGCTGCCTCTACCAGACTGAAGTTCACTTAGTATGAGAAAATGTTAACATGAAAGTGAGTGACGCAAAATAGTCTCAAAATAATTACAACAGAGCACACATGAATAACATTTTGGGGAACTGAAACTATTACCGTAATTTCCcattttgggatcaataaaaaaaataacaaaaatctaTCGGCCATGAAACTGTTCCATCTCATTTGAGAAGAACAGATGTGCATTATTCCAGGatatttacaaaaatattttaaacaagtAGACTTAAAGAATACTTAAAGAAACAATTGACAAGTTGGTTAACATATTATTTTTTGCTGAGAAttagatgaaaagattgatactACATGGAGCTAATACCAGGAGCTGGTTAGCTTAAAatcatttttacactttggtttttgtatggATGACACAAATCACATATAAGCTTTACAGATGCGTGTAGACAGAGTTGTTGCCTTTGGTCAGAGCTAGCTAGGCCAGCTGTTCCCCACTTCTTACCTGTCCTTGTGCTAAGCTACTCTTCTACTTCTTATAGGAGTAgttagacattttgggaaatatacttCTTTGCATTTTTGCCGAGTGTTTGATGATAAGATTGACACCACTGTCATatctgttaaatatgaagctaaccAGGAGATAGTTAGCTTACTTTAACACAAAGCACAACTTTTTGTAAAACATTTcgattaaacaaacaatattaaattcatttgtgagtttttgagttgtttgtaggctgattttgttacctttggacagagctaggctagctgtttctccctgcttgaagtctttatgctaagctaagctactcTACTACTACTTTTAGAAGAACATTAACATTTAGGTTCGTACACTTATTCTCTTTTTTgtcgagagttagatgagaagattgataccactgtcTTGTCTGTGCGCTAAATATGAAGTTTAAGCCAAGAGGTGGTTAGCGCTTAGCATGAAGCACAAGACCTCCCACAACTTGTCATTTTTACAATtcagtttttgtacagatttagTAAACAAGATATACCATGTTAATATGTGAGCTTAAGAGGTGTTTCTaagcctttttttccccctccagaTAAaagccaagctagctgtttcccctgtttccagtctttatgctaagctaagcaaaACGTCTTTTGGAAAAACATGTCATGAAAATGACACAGGATAAAAGGTCTACTCACTGATCTGACAGATTGTTGCAAAGTACTGACAGAGGAAAATATTAAACTCTTTCGTTATGCGTTTGTATCATCTACAGGCATACATTTAAGTATTTAAGTAACCTTTATTTAGCTATACTCGAGAAGTCATTGAGGGATGGCCCTCATTTACAATGACATCGAGacaaattacaaagacaaaaacaaaacaacacaaaaaggaAGCGACACCATCATGAGAAAAATAGATAGACACTTAAACTTTCTGAATTGGAAAAAtgatttgataaataaattaggaTAATAAGGATGCAAAAGAAAGTACAATTATGTAAAGCAATTACAGTACAAGTAGAAGTTTGCAGGTTTAAAACCAGATTTCTAAATTGTCCAAAAGGTACAAGTGAGTTGATTTTAAGGAAGTGCTGTAATTTGATGCAGGAGTCAGAATTACAAGCAACCACTAGTGAGAAGTGATATACATGGTGTTCTGTCAACGATACTCCTGTGACCGAATGTGACAATGTTCTaagagaagaaataaaacaagAGCTAAGGAGGGATGCAAAAGGGGATTTTGACAACaagcagaggaggaggtgggacgAAGGTAATTCCTGAACAAATGAGTTTTCAAGAGGAGGTTGAGCCAGGCTGCGGAGGAGTCTATCACCACGTAAGATGGAACAGAGAAGAAGTTAAAACAGGAGATAAGGGGATGAAGGTGGAGGAGGACATCTTTGtaataaaaacaacagcaaaGCTAAGCTGAATATTTTATGGAAGATAAAAGTCCGATGCATGTGACATTCCTGTTTATTTACTAGTGATGAATAATTTAGGTTTTCTGTGAGATAGATATAGAAATAGAAGCAAACCAAGGATATCGAGTgacctttttttctgtcttgtttTCCATCTGCACTGACAACTTAATGGACGAAGTAGGTTTAAGctgcaggtttaaaaaaaaacagtagcgGGAAATCGTATGCATGATTTGTTGATAATAGCTCGGTAACCTGCTGGAGTTTATCATGGACTTTTGTGCTTGCTTCCATTTAATCCTGAATACTGTCTGCAtacacattatttatttaacatgttttattatttgtgaaggtaaaactggattcaaaatgaatgtggtgttgcaTTATATCCCATGGTTTTCAAAGAAAATATGtataaaataatcttttttgCACGGGTACGTACTTCAAAACTTATACAGGCAACTTAAAATATTTTCTATACAAATCATAGTGTGGACTTTTCAGTTGCCTATTATTGTCAAAACCTTGTTGAATTTAATGTAGATTTTGCAGTATTGTACAATTAAACATTCCAATTGGTcattataatttaaaataatgtttatgtATTATGAACTCTGA

Function

GO: NA

KEGG:

id description
K10469 KLHL34; kelch-like protein 34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300130 lncRNA downstream 74790 22114382 ~ 22120446 (-) False LOC120552473
TU300100 lncRNA downstream 103483 22091541 ~ 22091753 (-) True G221793
TU300069 lncRNA downstream 250546 21944370 ~ 21944690 (-) True G221768
TU299991 lncRNA downstream 362352 21832156 ~ 21832884 (-) True G221712
TU299984 lncRNA downstream 379513 21814496 ~ 21815723 (-) True G221708
TU300148 lncRNA upstream 23843 22223889 ~ 22246053 (-) False G221832
TU300146 lncRNA upstream 36768 22236814 ~ 22246053 (-) True G221832
TU300147 lncRNA upstream 36768 22236814 ~ 22246053 (-) False G221832
TU300154 lncRNA upstream 43761 22243807 ~ 22299575 (-) True G221837
TU300160 lncRNA upstream 100372 22300418 ~ 22301215 (-) True G221843
XM_039790569.1 mRNA downstream 74625 22115085 ~ 22120611 (-) True LOC120552473
XM_039789698.1 mRNA downstream 184150 21994544 ~ 22011086 (-) False tfr1b
XM_039789697.1 mRNA downstream 186148 21992289 ~ 22009088 (-) False tfr1b
XM_039789696.1 mRNA downstream 206434 21953645 ~ 21988802 (-) False tnk2a
XM_039790526.1 mRNA upstream 2721 22202767 ~ 22218381 (-) False smpx
XM_039790527.1 mRNA upstream 2721 22202767 ~ 22217459 (-) False smpx
XM_039789868.1 mRNA upstream 479645 22679691 ~ 22688402 (-) True LOC120552124
XM_039789869.1 mRNA upstream 479645 22679691 ~ 22688399 (-) False LOC120552124
XM_039789870.1 mRNA upstream 479645 22679691 ~ 22688397 (-) False LOC120552124
XR_005637957.1 other downstream 186148 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 1332571 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2868342 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 3245755 18938999 ~ 18949481 (-) False mettl4
unassigned_transcript_1418 other downstream 3570438 18624726 ~ 18624798 (-) True trnar-ccg_3
TU300141 other upstream 2737 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2737 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 2763399 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 2856547 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 3356427 25556473 ~ 25562540 (-) True LOC120552299

Expression Profile