RNA id: XM_039789543.1


Basic Information

Item Value
RNA id XM_039789543.1
length 1916
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120551947
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4881288 ~ 4888711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCATCTGACTGTCGAAGCAGCTGTTAGTCTGAAGTCACACATTAAGATGAACTGAGAGCAAACAAGATGGACAAAGTTCTGCTGCTCATCATGGCTGCATCAGGGCTGAGTGCTGTCTCATCACAAGCTGGACGGCAgtactattttttttatgagcCGCAGAACGTGACTGAAGCAAAAACTTACTGCAGAGAGAAATACACAGACCTGGCCACTGTAGACAGCATGGAGGATGTAAAGACCCTGAACAAAATGGCAGATTCAAGCAACATGGTCTACCCAGGATACCCAACATACTACAACTATCGAGCATGGATAGGACTGTATGATGACGTGAACAGCTGGCGGTGGTCACTGACGAACACAAGTTTCTACAAACCCGGGGAGACGGAGTTCAGACGATGGCGGAATGGGGAACCGAATAATATGTTCAGTAAAGAACACTGCACACAGATGGGTGTTGATGGGAAATGGAACGACGCCAGTTGTGACAGCTCCATGAAGGCAGTCTGTGTACAGGTCAGAGGGCCAGATGTGACTTTTATCCTCACTAACATCTCCATGTCGTGGCCTGCGGCCCAGAACTACTGCAGAACACAGTACACAGACCTGGCCAGTGTGAGAAACAGCACAGAGAACCAGAAGGTGCAGGACCTGATACCTACTGGAGGAGCAGTCTGGATCGGCCTTTTCAGAGACTCCTGGAAGTGGTCGGATGGAAGTACTTCCTCATTCAAGTACTGGAACACTGGGTACCCCAACAACAAAGCTGGGAACGAGGCTTGTGTGGCTGCAGCTTTCAATCAATCTGGACAATGGGAAGACTGGAACTGTGGCGTCAAGAGAGCATTCATTTGCTTCGGTCCAGTGCCTGCTTCAAAGGATGTGATAAGACTGAGTTTGGAGAAGAAGAACTCCCTGGATCTGAACAGCCCTGCTGTGATGGAGGCCATGTTGAAGCAGCTCCAACAGAAGCTGAAGGCCCGGGGGCTGGACGGCAACATCAAACTGAGCTGGAGGAAGCAGGCCGATGGAAAAGTCTTCcacaggaagaagaagaaggatgagCTGGAATGATCGCTGCGctgttttcatcagagaaaaGTGTGTTTCTTTCCTTAGAGTGCTAACGGGCTAGAATAGAGATGTGACAATCAGCTGATTAACCCATAAGCCCACTTCCAGCTTCTCAATAATGAAGTTTTGATTCTTTTCTTCGTCATGTATGATCATTAACTTAATATCTCTGGGCTGTAGACTGTTGGATGATTGAAACAAGACTTTTGAATATATCTGCTTTGGCTGCGGGTAAATATAACAGACATGTTTCACtagtttctgacattttgtagaaCAGATACGTTAAGATTAGAAAAGATTTTGCAGCAGAACCATGCACTATTTATTTACAGTTAAATCACTCGCTCCACGGACCCAAGGAAGTGCATTTACAAGTGTGAAGTTGTTTGATAGCGCGGTTCTCCAGATTGCTGCAAGCAGCAACACCGGAGGCCATAGACGCGTTTAatacgggcactgcactagtgcTTCTTCAACACAAGTCCAGTTACATAAATAACGTCAAGGAGTCTGATATCACATTCAAATCATCCTGTGTTTGCATAGAAAGTCAAACCAGCGGCGGAGGAAGTATTTACATCCTGTAGTAGAAATGAACTGGTTTCTAAACAAGGTTCAATGCATCGCTTCTCTTTGTTAGaggtgaatgttttttttgtacatggTCCCTGATATTGTAATGCAACAAACTAAAGTAAATGTACCAATcccaaagtaaagtaaaagtcctgcaatgTAACTGTAATAAAGGtatttaaagtggccatattatgctcattttcaggttcataattgtaattggagattgtatcagaataggtttacatggtttaat

Function

GO:

id name namespace
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295015 lncRNA upstream 119038 4759620 ~ 4762250 (+) True G217964
TU295016 lncRNA upstream 119627 4759620 ~ 4761661 (+) False G217964
TU295021 lncRNA upstream 225814 4655265 ~ 4655474 (+) True G217969
TU295007 lncRNA upstream 357392 4523594 ~ 4523896 (+) True G217956
TU294993 lncRNA upstream 358582 4522385 ~ 4522706 (+) False trdmt1
TU295068 lncRNA downstream 67362 4956073 ~ 4956401 (+) True G218012
TU295081 lncRNA downstream 313876 5202587 ~ 5202896 (+) True G218023
TU295083 lncRNA downstream 345079 5233790 ~ 5234090 (+) True G218025
TU295084 lncRNA downstream 358584 5247295 ~ 5247686 (+) True G218026
TU295089 lncRNA downstream 533263 5421974 ~ 5422348 (+) True G218031
XM_039789744.1 mRNA upstream 124471 4618641 ~ 4756817 (+) False plppr5b
XM_039789740.1 mRNA upstream 124471 4618646 ~ 4756817 (+) True plppr5b
XM_039789742.1 mRNA upstream 124471 4665575 ~ 4756817 (+) False plppr5b
XM_039789743.1 mRNA upstream 138324 4618639 ~ 4742964 (+) False plppr5b
XM_039789738.1 mRNA upstream 358839 4511713 ~ 4522449 (+) True trdmt1
XM_039790919.1 mRNA downstream 646936 5535647 ~ 5555611 (+) True LOC120552695
XM_039790206.1 mRNA downstream 862170 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 965929 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 1021166 5909877 ~ 5928609 (+) True lancl2
XM_039789960.1 mRNA downstream 1045309 5934020 ~ 5948852 (+) True vopp1
unassigned_transcript_1388 other upstream 23176 4858027 ~ 4858112 (+) True trnas-acu_1
unassigned_transcript_1387 other upstream 29878 4851324 ~ 4851410 (+) True trnas-gcu_48
unassigned_transcript_1386 other upstream 30692 4850513 ~ 4850596 (+) True trnas-gcu_47
unassigned_transcript_1384 other upstream 37171 4844032 ~ 4844117 (+) True trnas-gcu_46
unassigned_transcript_1383 other upstream 38578 4842631 ~ 4842710 (+) True trnas-gcu_45
unassigned_transcript_1392 other downstream 681294 5570005 ~ 5570086 (+) True trnas-gcu_52
unassigned_transcript_1393 other downstream 683341 5572052 ~ 5572133 (+) True trnas-gcu_53
unassigned_transcript_1394 other downstream 684351 5573062 ~ 5573143 (+) True trnas-gcu_54
unassigned_transcript_1395 other downstream 687410 5576121 ~ 5576202 (+) True trnas-gcu_55
unassigned_transcript_1396 other downstream 689899 5578610 ~ 5578692 (+) True trnas-gcu_56

Expression Profile