RNA id: XM_039789547.1


Basic Information

Item Value
RNA id XM_039789547.1
length 3217
RNA type mRNA
GC content 0.41
exon number 3
gene id nrros
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9767592 ~ 9777716 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gCTGTGCTGCTTGAGAGCTGTTGAGCTTGCACTTGCCTTCCTGTGGCCCCGGCCTTGAGAACCTCTTTCTGATTGCAGCTTGTCCATGTGACTTTGGTTTCCGTTGCTTGCCTGCTTCCGTGAATAGTAAAAAAGAAGCAGCAGTGCTTCAGTCGGAGCAGAGGAAGGCAGCtgaacctcagagaacacactCTGCAACAGCCAGTCAACTAGCGATATGGTCAGGGGATCAACCGTCAGTGGCTTGGGAAATCCACACCTAACCACCAGCCAGTGAGGATGTTAAAATGCCAGTCCACGGCCTCACTCCCATCCTGCTTTGCTTGTTAACCATGTGCAGAATCCTGACGCCGGTCTCAAGTCATCCACAACACAACCCATGTCAGCTGATACAAAGAACGGCTCTCTGCAACAATCGCAACCTTTCCGCTGTGCCTGAAAGACAGCCAGACAACCTAGAGGAGTTTCAGCTCAACTACAATCACATTCAAACACTACGGGACAACTCTCTCCTCCGTTACCCCTCATTAAACACCCTGAGCTTAGCTTGTAATAGTTTGGAGAAATTAGAATCAAACACTTTTCAAGGCACCAAATTGTTAGAAAACCTCAATTTAGCAAATAACAATCTTCGTATTGGCTACCAAGAAACCAGCCTCGCATTAAAGACTCTTCCCAAGCTCAGAGCTCTGGATCTCTCTGAGAATGAGCTTGATGACGAAATGGTGGCCACTCTTCTCCAAAATCTGACGTCCCTGGAGTACCTCAATCTTTCCGGAAACTTCATGCAGAGACTGGATGAGACCTCGTTCAGAGATCTTTACCAACTCAAAGAACTCAACCTACAGAGAAATATGATGTACGAGCTTGATGGTGCCTTCGACAGCAATCCCAAGCTCCAGCGGCTCAACTTGGCCTTCAACTATCTGCATTGCCTGACAGACTTCCACATGACCGAGCTGGTGGTCCTCAACGCTAGCCACAACTTCATTGAGTGGTTCATCTCCAGACAAGACCTTAATGACATCTTCCAGCTAGAGACACTCGATCTATCAGATAACAAACTGCTCTTCTTTCCCTTCTTGCCCAACCACAGCCACTTGCGGAATCTTTACCTATCCCACAACAGCATTAGCTTTTACCAACACTTGGCAGACAACAGCACATTCCCAAACTCAACTTCAACTGTTGAGTTCTACAATATGCAGGAGAACACAGGCAATGTGACGGCTCAGCTGTGGGACGAGAGCCTTCACGGTGACATCTCCTCTCTAGAGATTTTGGATCTAAGAGGAAACCAGGTGGAGTACTTTCCTCAAGGTTTCATCCAGAAAATGCCTGTCCTGTCTCGACTACAAATGTGCACGAACTGTCTGGAAACCTTAAATCTAACATTGGAACAGTTCTCTGGCAGCCTGTACGAGTTGGACATTAGCAATAACAGGCTGAACCAGATCGTAGCAGATGGAGGTACGCTGACCACTCTTGGCAATCTGACATACTTTAACCTTAGCCTGAACAATCTTGGGCGGTTACCGTCAGGATTATTTTCCTCATTGCCAAGCCTCAGGTCAGTGGATCTCAGTTATAACAATGTTGACATTTGCCTTCCTGAGGAACCTAAGATCAGTACAGACACTAGCTCAGCTTGCGCATATTGGAACAACGTTGTATACCTGAAACAGCTTTACCTCAAGGGATGCAACCTCAAAATAATTCCATCGTCTACATTTTCTGGGTTGTCTCTAACGCACTTGGAACTGTCCGACAACCCCGGCCTCATTGTCCAAGAATCAATACAAAGTCTCAGCAGAACGTTACAGCATCTAGGTTTAGGAAATACTCAGATACAAGACTTTGACTTCTCCCATTTCCAAGCTCTGAAGTCTTTAAACATTTCAAGGAACTCCCTTGCCCATCTTCCTTCTTCACTTCTAAAGCTTGACCTGAAAGTGCTGGATTTGAGGGACAACAGACTGTCCACTATTTCCTCAGGTCAGGCTAACGCATTAGCCCCGAAACTGCACACTGTTTTCCTCACAGGAAATCCGTTTAACTGCTGCCAAACTGAATGGTTCAGGACATTTGAAACAACAAAGACAATCAATATGGTCGGACAATCAGACATTGAATGTGAGGATCTCAtccaaacaacacacagagtgGAGCACTTCCAGCAATTATTGTGTTTGGTGAAAGGTGGTGAATCTATAATCTGGTACATTCTGCTTTTCGTACCCATCTGTCTTTCTTTTGTGGGCATTTCAATTATTGTTCTCCTCACCTTCAAGCCCAAAATGCTACAAAAGTCAATCAAAAAGAAGTGTTTGAAGCCCACATCTTACTGAAACTTTATAAACCCTCAACCGAACCATATTTTGTAAAGTATATTATTAAGAAATGTAACTGAATGTAGGGCTGGGATATATCTCTATAACAAGATAAATCACGTTTTCTGGTAATTTCATGAAGAGTCCGTACAAAATAATCACATGGTAAAGCCTATTtttgtatagatagatagatagatttttttttattgatcccaaaaaaatgggaaataatggtgttgcagcagcaaaaatatcagacacacagcatacatacagagtatacattaattaataggaaacaatatacattaaataataattgaatactacacaagcaatatttaaaatatatacaagatGGTGAGTAAAAATTTACAACTGTTTCCCTAGTAAAGATAGGATGTagataaacctattgtgcaagGTTGTGCAAGGTACATTCAGTGCAgttgtgatgtatatgagtcttatctcatactcagtgatgaagtgttgtATACTCCTGTGTGAATTAAATACTTGACAAATGAGAAAAGACTTTAGTATTTTATCATATTATTAAGAACTTtagtgcaaaatgaacataacagtttaaagattttttttccagctatacactatatatacaaatagtgtgatgtaaaaacaaaaccgcaAACTTCAAATGGTGTTCcttcaaaatatttcacatcagATTTTCTGAGAAATTTGAGTTAGTATGTGCTAGATATTATCAATTTAGACTACGTGAATATATATCACGTTATCTCGAGATATGATATCATAATGATACAATTACATTGAAAAACGACAAATTATCATATTGGattattgcccagctctaactgAATGTATGTTGGAAATAAATTCAAGTTATTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296036 lncRNA downstream 304550 9460354 ~ 9463042 (-) True G218745
XR_005637928.1 lncRNA downstream 352141 9414966 ~ 9415451 (-) True LOC120551892
TU296033 lncRNA downstream 352261 9414966 ~ 9415331 (-) False LOC120551892
TU296030 lncRNA downstream 392380 9374859 ~ 9375212 (-) True G218739
TU296026 lncRNA downstream 470354 9297037 ~ 9297238 (-) True G218735
TU296063 lncRNA upstream 55746 9833462 ~ 9843509 (-) False cngb3.1
TU296105 lncRNA upstream 169571 9947287 ~ 9947510 (-) True G218807
TU296112 lncRNA upstream 237033 10014749 ~ 10078804 (-) True G218811
TU296126 lncRNA upstream 435629 10213345 ~ 10213608 (-) True G218822
TU296136 lncRNA upstream 525486 10303202 ~ 10303405 (-) True G218830
XM_039789977.1 mRNA downstream 41519 9614840 ~ 9726073 (-) True LOC120552183
XM_039789978.1 mRNA downstream 41520 9614840 ~ 9726072 (-) False LOC120552183
XM_039790291.1 mRNA downstream 594568 9087151 ~ 9173024 (-) True col11a1a
XM_039790295.1 mRNA downstream 594568 9088509 ~ 9173024 (-) False col11a1a
XM_039790294.1 mRNA downstream 594568 9088509 ~ 9173024 (-) False col11a1a
XM_039789549.1 mRNA upstream 8463 9786179 ~ 9790167 (-) True fbxo45
XM_039790059.1 mRNA upstream 27789 9805505 ~ 9813890 (-) False LOC120552222
XM_039790060.1 mRNA upstream 27789 9805505 ~ 9813878 (-) False LOC120552222
XM_039790058.1 mRNA upstream 27789 9805505 ~ 9813877 (-) True LOC120552222
XM_039790894.1 mRNA upstream 56825 9834541 ~ 9848241 (-) True cngb3.1
TU295702 other downstream 1336662 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 1571713 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 2425697 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 2464825 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1409 other downstream 2466452 7301069 ~ 7301140 (-) True trnaw-cca_32
TU296313 other upstream 799683 10577399 ~ 10669527 (-) True G218950
TU296891 other upstream 3411937 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 3910705 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 4047077 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 5268432 15046148 ~ 15048663 (-) False xkr9

Expression Profile