RNA id: XM_039789552.1


Basic Information

Item Value
RNA id XM_039789552.1
length 2229
RNA type mRNA
GC content 0.43
exon number 7
gene id fam168b
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9790312 ~ 9796422 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACCACGTGACACCACACGGAAGTGACGCGTATGCTCAAAAGAGTTCAGCAAAGCATCTGGGAGCAAAACACCTAgcttaaatacattttccacCAGAAGACCAAAGGAGGAGACTAACAGACGGTCAGAACAGTTAACACATCTGTGAGTAGGCGTCCATTATGAATCCGGTTTACAGCCCTGGGCCAACAGGGGTCCCCTTTACCAATACTAAGGGTATAGGCTACCCAGGATTCCCTGTTGGCTACGCACCAGCATACACTCAGAATATCTATGCAGGAGCGAACGCAGCCTTCCCCAGTGGCTATGCTCCAGGCACTCCTTTCAAAATGTCCTGCTCTCCCAACACTGGGACTGTCCCACCATACTCCTCCTCACCCAACCCCTACCATGCTGCTGTTTACCCGGTCAGGAGCACCTACCCCCAACAGAACCCCTATGCACAGGCACTAATGCCTTCACAACAACAAGGCACTTACTACACACAGCCGCTGTATGCTGCACCGCCACATGTTATCCATCACACTACAGTGGTCCAGCCAAATGGGATGCCTGCAGCCATGTATGCCCCGCACATGCATCCTCAACGCCAAAACAGTGTCACCATGGGGATGGTAGCCGGCACTACCATGGCCATGTCAGCTGGAACTCTGTTGACAACTCAATCACCAGCGCCTGTTGCCCCCCACCAAGTCACGATGCCCACATATCGGCATCCTGGCACACCCACCTACAGCTATGTGCCCCCACAGTGGTGAAGAGAGGGACGCGTCAGAAGATGGTAGATATGCATTCACACTCTACTCCAGTGTTTTTTGCTATTGGTGAAGACCTGCCCTGCCAGTGTCTGCAACCAGTTACTCTTCCAGCATAATGTGAATCTAAAACCCCATTTGGATAGGAGGGGGTGAAGAATAGGCCCATCCCCATGACCCCTCTCAATGGAATAAGGCTGCATTCCATGTCACACCCCAGCGCCAGCACCTCTACAACATGCTGCATATCTCACATCAAACAGCAATGCCTCCATGCAAATTATTTTGTGAACTGTCATGCAGGTTTTTATAGCTTAAACTCTTAAGTGGTAAAAAGGAAGTTTGgaatagtttttttgttgtttcttttaatttgggggacacatatgatgttgaatgcatgtgtgtgtatatatagatatatgaaGTAATGCTAGCGCAATATACCTGCTGTGACAGATGCAAAATCAACAAAAGGCACACATCCAAaggaactttaaaaaaaaaagaaaaaaaaaaaaaaaaagtaataatctgCAATGCTGAATCACCAGTGACCATGTCTGACATgtgaaagaagaaaagacaagaaatgttAATTCATGCAAAAACATACCTGCACAAACAAGTGCAGACCAAACTGTACTGTTTTTCACTGCTTTGTGTTTTGGTAGGTGGAGCTAGGTTTTTATTTCTCTCAGTGATGCAGTGTATGCATTTTGTCTTaccatttttgtattttaggaAAGATGGGACTTTGAGTTTGTGCCTCTGACTGATGGCCATTCCAACACGTAATCACAGCGTTTTATTTTTCCTGCCCTgtcaaacctttaaaaaaaaaaaaagaaagtatcaACTTTTTCAAAAGTGTGAAGCAGCTTTGTTTCCTGCTTTTTTTGGGTGGCATAAATGATTCACTTATTTTAGCCAGACGCGTTCTTGATGGGGAACGAGTAGAGGTAGTTGTTGGAGATCATTTGCACCCATTTAAAAGTTGAAAGCGTGGAGGAGTAGGAACAGTTTTGTGtgtgagtatatgtgtgtgaatgaaagAGGATTAAAATAGAAACCCATAAAAAATTTTGCCATACCATGCAAAATGCCTAAAATATTACACCTACATTTCACAATAACCAATTTGTTCGTAGGTTGAAGCACTACATCATTAAATCACTGCTAACTGTGGACATTTTAGGAAAACATGATATTGTTAAACTCCATTTGTGAATAGCACTACTGAAAGAAGGCACTAATTCAAAAACAGTAAAGATATCTGACCTTTTACATTGCTCGCTGTTTTACCTCAAGGTTTTAGGCTAACCCACCAATATCACTGTTTCAGACATGCTTTTCTATGTTGCCTCAGTCACCTCCGTTACATAATCTGTTttgtaaatgttatttttgtgaatttggTTCTTGTTTTGTATTCTAAAGAAAGACCAAAAATAAAACCAATATAAGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295994 lncRNA upstream 42606 9747345 ~ 9747706 (+) True G218710
TU295993 lncRNA upstream 43039 9747029 ~ 9747273 (+) True G218709
TU295971 lncRNA upstream 124634 9614840 ~ 9665678 (+) True G218690
TU295976 lncRNA upstream 453773 9336332 ~ 9336539 (+) True G218693
XR_005637936.1 lncRNA upstream 497659 9260442 ~ 9292653 (+) True LOC120551942
TU296015 lncRNA downstream 15797 9812219 ~ 9813878 (+) True G218724
TU296018 lncRNA downstream 45897 9842319 ~ 9842709 (+) True G218727
TU296019 lncRNA downstream 48532 9844954 ~ 9848196 (+) True G218728
TU296094 lncRNA downstream 168012 9964434 ~ 9964804 (+) True G218796
TU296137 lncRNA downstream 532833 10329255 ~ 10329525 (+) True G218831
XM_039789548.1 mRNA upstream 28177 9747902 ~ 9762135 (+) True sh3glb1a
XM_039790880.1 mRNA upstream 44858 9737279 ~ 9745454 (+) True LOC120552675
XM_039790881.1 mRNA upstream 44858 9737284 ~ 9745454 (+) False LOC120552675
XM_039790342.1 mRNA upstream 199135 9479068 ~ 9591177 (+) False ntng1a
XM_039790057.1 mRNA downstream 759 9797181 ~ 9805437 (+) True rbbp8
XM_039790056.1 mRNA downstream 18384 9814806 ~ 9833063 (+) True nsmaf
XM_039790289.1 mRNA downstream 604742 10401164 ~ 10415362 (+) True zmp:0000000991
XM_039790290.1 mRNA downstream 608232 10404654 ~ 10415362 (+) False zmp:0000000991
XM_039789774.1 mRNA downstream 667924 10464346 ~ 10473620 (+) False ngdn
TU295978 other upstream 331612 9458183 ~ 9458700 (+) True G218695
TU295977 other upstream 412165 9376944 ~ 9378147 (+) True G218694
XR_005638015.1 other upstream 560149 9211918 ~ 9230163 (+) False rnpc3
XR_005638067.1 other upstream 1051670 8738575 ~ 8738642 (+) True LOC120552752
TU295658 other upstream 1184489 8600960 ~ 8605823 (+) False G218441
unassigned_transcript_1412 other downstream 436064 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 626164 10422586 ~ 10423249 (+) True G218848
TU296196 other downstream 691845 10488267 ~ 10494988 (+) True G218875
TU296191 other downstream 727016 10523438 ~ 10526204 (+) False dcaf11
XR_005637949.1 other downstream 972953 10769375 ~ 10815975 (+) False zgc:101569

Expression Profile