RNA id: XM_039789569.1


Basic Information

Item Value
RNA id XM_039789569.1
length 3608
RNA type mRNA
GC content 0.44
exon number 1
gene id mc4r
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24357609 ~ 24361216 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTAAGTGATGATCTGCCTGCACTTCCACAGCGAGCTGGTACGCTCTGATCTCTCTGCCTCTCATGTTTCTGTTCACTGGTAATCAGTCTCCCACACGCGTCTTCCTGCATACACCTTTCTGCTTCACTTTCCACTAAATCTTTCTCACATCTTTTTAGGGAACATTTATTTTACCGTACGCACTGAGTGGAGAGAAGGGAGTAGAGCGCTGGCATTGTTTTTGGCAGAGagtaacaacagcagcagatgcTTGAAGATAATTGCCGTTCTTGGGAAACCTAAAAGGTGAAAAAGAAggaagatctttttttttcgaTCCCCTTCAAGGGTCCCGAGGTTATCCTCCCGATAATAAGGATGACTGACTGAGCGCACACATTGAGATTTTTAACATTGAAAATCCAGATGGACCCATAACAACGGGGGAAAAGAAGACTTAACCCAAGAAGAAAGGGAATTTAAAAGGGGACATTATGAACACCACAGATCACCATGGATTAATCCAAGGCTTCTATAACAGGAGCCAAACCTCAGGCATTTTTCCACTTAACAAAGACTTATCAACCGAGGAGAAGGACTCGTCGGCAGGATGCTACGAGCAGCTGCTGATTTCCACGGAGGTTTTCCTCACTCTGGGCATCATCAGCCTGCTGGAGAACATCCTGGTTGTTGCTGCTATTGTCAAAAACAAGAACCTCCACTCGCCCATGTACTTTTTCATCTGTAGCCTCGCTGTAGCTGACATGCTTGTCAGTGTCTCCAACGCCTCAGAGACTATCGTCATAGCGCTCATCAACGGCGGCAACCTGACCATCCCCGTCACGTTGATCAAAAGCATGGACAATGTGTTTGACTCCATGATCTGTAGCTCTCTGTTAGCGTCCATCTGCAGCTTGCTGGCCATCGCCATTGATCGCTACATCACCATCTTCTACGCGCTGCGATACCACAACATTGTCACCCTGCGAAGAGCAATTTTGGTCATCGGCAGCATCTGGACGTGCTGCATTGTGTCGGGCATCCTGTTCATCATCTACTCCGAGAGCACCACCGTGCTCGTCTGCCTCATCACCATGTTCTTCACCATGCTGGTGCTCATGGCTTCGCTGTACGTCCACATGTTCCTGCTGGCGCGCCTGCACATGAAGCGCATCGCCGCGCTGCCGGGCAACGCGCCCATCCATCAGCGAGCCAACATGAAGGGCGCCATCACCCTCACCATCCTCCTCGGGGTGTTCGTGGTGTGCTGGGCGCCCTTTTTCCTCCACCTCATCCTCATGATCACCTGCCCCAGGAACCCCTACTGCACCTGTTTCATGTCCCACTTCAACATGTACCTCATCCTCATCATGTGCAACTCCGTCATTGACCCCATCATCTACGCCTTTCGCAGCCAAGAAATGAGGAAAACCTTCAAAGAGATTTTCTGCTGCTCGCACGCTCTCTTGTGCGTGTGAGCTGCCTGTTAAGTGTGAGCCGAGCTTCGACTCTGACAGCTGCAATCAGCAATTTAAATGAAACTTGGCCGACAAGGACTTTGAGGTCTGTGAGATGTAATCACTGTGGACTCATCACTGTGGACTCATCACTGTGGACTCATCACTGTGGCTCTGTTGTGCCCAGTGTTCTCGCAGTCGGCTGTTAATGATTGAAAAGTAGGGCGCTCGCCTTTGGTTACATGAGTCAGGTTGCTGAAGAGGTAGGTTTACAGACACCTTGTAAAATAGAGTACAGCTCCGTAGACAAATGCTCTTTTGTTTTGTAGTAAAACGCCGCTCTAAAGTGCAATTTGAAGTAAATGTTACCGGCATGTATATAACCGATACACATGCTCAAACTGTGGCTCATTTACCaaccttttctctttctctttctcacactGAACTCTTGTCTGTCACATTTGTCTTGCTGTTCACTGTCAAAGAAAATAATATGGTTATCTTAAAGATCTCCGTGTATCTACATGAATTATGGCACTCAAATGTCACAGCTGTTGCAACAGCAGCTTGTCCTTTAGATATCTAGCAAAGAGATTAGAGACATAGTATTCGACAGACTACCTCCATGCTTGAGAGTGCCACCCACCGCTTAACAGAGCAAATGAGATCATTTTGCACACTGCAAGCAAAGATAGAAATATGTTTACCCCTGTCATATGCTCTTGTTGTTTTGCATTGCAATGAATGTAAATATCTGTAcatctgtaattttttttattaagcctCACTGATTTGTAATAATGTGCCAATCATGAAGGCGATGAAGGCAGTGTATCCTGCTCAAAAAAAGTGGgatgtttaacttttttataaatgtggcTTTTTTGTAAGTTAGAGGTAAAACTATTAGAAAGCTAACACAGGGGAAACATCAATTGAAAAGGACTACTTGGTGGAAATGAGGTGTTATGTGTGATTTTCCAAGCTGCTCTAAACGGATAAGTGACACTGAGATCAAACTAGATGCTTCTAGAATTCACAAAACGAGCACAAACAAAACCATACCACATCTCCACTCTTTGCTGATCTGCCATTTCCCGTGTCTAGCCCACTCAGCGTAGTAATCACAGGCTATTGACTGGGATCTAAAATGCAATGGGTTGTAAAATCACTCACTGGGTTACATGTTTACAGCAATGAGGGTAATACTGTACATGCCCTCAGTATGAATAGTATGGAAAACAAATGACAGAAAATAGATGATTTAGAGCTTCACTTTAAAAtggaaaaagcaggaaaatctCATGTGTTTCTCAGGCACAAAAGATGGTGTATATGTAGTTTAGTTTATCTGCACTTATAGACAAATGTGAAAAACAATTCAGGGTGACCAAGAACCTTTCCTCCAGTGTGAAACCTCCCGTTTTTGGCACTTTACACCCTTACCTGATCAGGGATGCAGTTTTTGTTGACCCTCACCACTGATTTCCCCCTTTGAAGCAGGGCAGCAGAAAAGATTTTATTTCATCCCAGGGATGAAGAGAAAGTCACTTTAATGTTTGCAACTCGTGATTTTCGTCTGAGCAAATACCTAAAACAGACAATTAGCCTATACTATGAaacaagatcaacatgccctggatttatttacgtttcccaatccagcgatgCACGTTCatataaaagaggcggtgtttgctccatatgaccaatcgcaaacatggACAAGTCTACCaaagccgcatattttacacaaGAAGAGCAAACGATAATCCTACAGAAATATGAAGAAGACAGACACGGTTTGACAGGTAAAAAGCCAttcagtcgctgcttcctaacccaggaaggaaagctggcaaaaaattgCAGACGCTGTAAATGTATAAAGTACAagacttatcaatatcactgcCCCATGAGTCAAGCACAAtaaagatctgaccataattacacttgtgcgtTCCATAAACTTTGGTTGCTGTAGCCTATATtctttcagttgcaaccctggcagtggtaagcgatcatgggagcaaataaaataaaaacataattcaaaccgctgagCGCATGGGCAATATACGGCTCAAGAAGCTGACAAAGATACGTTATTCCCTCCGctaaaaatctatatctttcataaaaatacccatcagggaatgtt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0040008 regulation of growth biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004977 melanocortin receptor activity molecular_function

KEGG:

id description
K04202 MC4R; melanocortin 4 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300393 lncRNA downstream 164809 24189134 ~ 24192800 (-) True G222041
TU300389 lncRNA downstream 179622 24177740 ~ 24177987 (-) True G222039
TU300388 lncRNA downstream 189060 24168312 ~ 24168549 (-) True G222038
TU300387 lncRNA downstream 204847 24152479 ~ 24152762 (-) True G222037
TU300359 lncRNA downstream 533931 23823353 ~ 23823678 (-) True G222012
TU300416 lncRNA upstream 248245 24609461 ~ 24609679 (-) True G222062
TU300456 lncRNA upstream 433650 24794866 ~ 24795350 (-) True G222088
TU300458 lncRNA upstream 435596 24796812 ~ 24797616 (-) False avl9
TU301971 lncRNA upstream 533356 24894572 ~ 24898219 (-) True LOC120552180
XR_005637972.1 lncRNA upstream 533802 24895018 ~ 24904700 (-) False LOC120552180
XM_039789682.1 mRNA downstream 59758 24193378 ~ 24297851 (-) True drosha
XM_039789683.1 mRNA downstream 59759 24193378 ~ 24297850 (-) False drosha
XM_039790263.1 mRNA downstream 690752 23633683 ~ 23666857 (-) True cdh10a
XM_039790260.1 mRNA downstream 838083 23401543 ~ 23519526 (-) True LOC120552322
XM_039790262.1 mRNA downstream 905128 23401543 ~ 23452481 (-) False LOC120552322
XM_039790194.1 mRNA upstream 298895 24660111 ~ 24723840 (-) False rnf152
XM_039790196.1 mRNA upstream 298895 24660111 ~ 24723840 (-) True rnf152
XM_039790198.1 mRNA upstream 298895 24660111 ~ 24723549 (-) False rnf152
XM_039790197.1 mRNA upstream 298895 24660111 ~ 24715885 (-) False rnf152
XM_039790195.1 mRNA upstream 298895 24660111 ~ 24675977 (-) False rnf152
TU300141 other downstream 2139243 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2140060 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 2348521 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 3494944 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 5030715 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 602229 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 695377 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 1195257 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 1369540 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 1466875 25828091 ~ 25834224 (-) False mynn

Expression Profile