RNA id: XM_039789576.1



Basic Information


Item Value
RNA id XM_039789576.1
length 1181
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC120551976
representative False

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 20735026 ~ 20741393 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


caTCTCTCCGAGGGAATTTAAAGTTaagttttttaaaggaaaaagcAGTAGCCTTTGACAGCCCCAGCTTACTTGACAAGGCTCTCCTAAGTAAACCACCCCATACAAACATAATGGCTGACCCATGGCAGAATGCATATGACTTTGCTGTTCAAGTGGCAAGAGCTGCTGGAGCGGTGATCAGGAACGCCGGGGAGGATGACATAAAGGTCCAGACAAAGAGCTGCGCTGTAGACCTTGTCACTCAGACTGACGAGAGGGTGGAGAAAATCATCATCGGGTCTCTTAAAGAACAATTTGGAAATGGCACACACTGTTTCATTGGAGAAGAGTCAGTCGCAAAGGGGGAGCCATGTATCTTAACTGACAAACCTACATGGATCATAGACCCTGTGGACGGCACCACCAACTTCGTGCATGGATTCCCGTTCGTGGCTGTGTCTATTGCCTTTGCTGTCAATAAGGAGTTGGAGTTTGGTGTGGTGTACAGCTGCTTGGAAGACAAGATGTATAAAGCAAGGAAAGGGAAGGGAGCTTTCTGCAACGATGAACCGATTAAGGTGTCCGATGTAAACGACATCAATAAGTCCATTATCATCTCTGAGCATGGAACTGACAGGAGCATAGAAAAGGTAACCAAGATCTTCTCAACCATGCAGAAGATCCTCCGCATCCCAGTGCATGGGCTGCGTGGGTCAGGGACAGCTGCCACTAACATGTGTCTGGTGGCGTCGGGGGCGTCGGAGGCCTTCTTTGAGATTGGGATCCATTGCTGGGACATTGCTGCTGGAGCGGTTATAGTCAAAGAAGCCGGCGGACTAGTGCTGGATGTTGATGGGGGACCGTTTGATTTGATGTCTCGAAGGATGGTTTCAGCAAACAACAAGGTTATTGCTGATCGGATCATCAAGGAAATTGAAATATTCCAAGTGGTGAGGGACGACGCTCCGATACAGAAGAAATGACAATATCCAAatgtgttatatttttttttattttttcatgagTACAAGAGGAGTCTATGCCAATTGCTGTATGTTGAAATATAAAGTTTCTGTGCTGTAATCACTACTGATTGTCTTTGAATTTGCATACTGGTTGTGTTTCATCGGCTgcactttaattattttttggggcttttccctttatttgaaagtggatagacatgaaagggggagaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299600 lncRNA downstream 2784 20686190 ~ 20732242 (-) True G221400
TU299578 lncRNA downstream 167242 20567559 ~ 20567784 (-) True G221385
TU299546 lncRNA downstream 265573 20469146 ~ 20469453 (-) True G221359
TU299467 lncRNA downstream 472871 20258703 ~ 20262155 (-) True G221287
TU299476 lncRNA downstream 521768 20207738 ~ 20213258 (-) True G221293
TU299623 lncRNA upstream 20468 20761859 ~ 20762077 (-) True G221415
TU299625 lncRNA upstream 25208 20766599 ~ 20766961 (-) True G221417
TU299644 lncRNA upstream 54480 20795871 ~ 20821240 (-) True G221433
TU299690 lncRNA upstream 171095 20912486 ~ 20912751 (-) True G221471
TU299691 lncRNA upstream 219237 20960628 ~ 20960830 (-) True G221472
XM_039790630.1 mRNA downstream 2775 20572208 ~ 20732251 (-) True LOC120552510
XM_039790632.1 mRNA downstream 66943 20572208 ~ 20668083 (-) False LOC120552510
XM_039790631.1 mRNA downstream 66943 20572208 ~ 20668083 (-) False LOC120552510
XM_039790633.1 mRNA downstream 110504 20572208 ~ 20624522 (-) False LOC120552510
XM_039790090.1 mRNA downstream 544520 20179556 ~ 20190506 (-) True prpf4bb
XM_039790579.1 mRNA upstream 6356 20747747 ~ 20758794 (-) False LOC120552480
XM_039790578.1 mRNA upstream 6356 20747747 ~ 20758745 (-) True LOC120552480
XM_039790670.1 mRNA upstream 93787 20835178 ~ 20862688 (-) True LOC120552536
XM_039790186.1 mRNA upstream 123452 20864843 ~ 20872952 (-) False zgc:111976
XM_039790187.1 mRNA upstream 123452 20864843 ~ 20872252 (-) False zgc:111976
TU299133 other downstream 1408132 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 1785545 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2103551 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 2110228 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 3859726 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 94906 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 1248626 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 1461392 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 1461392 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 4222054 24963445 ~ 24967990 (-) False msl2b

Expression Profile