RNA id: XM_039789579.1


Basic Information

Item Value
RNA id XM_039789579.1
length 4908
RNA type mRNA
GC content 0.50
exon number 31
gene id asap1b
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19518530 ~ 19585448 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAAGTCATTTGAGAAGTCACCGGAGAAGAGGACACGTCTTTATAGATTAGATAGTTTCACACAGTTTTGCGAGGAAAATCGGCTTTCCCCTTCCATCGGCTCGCTTTCGCACCAGACTCCCAgtgctttttctttatttttacatCTTACATGGTTTTGACTTTCTGAGCATTCATCGCCAACCCTCCTGTGGGCATTTCCCCAGTTAAAGGATGCCGGATCAAATATCGGTGTCCGAGTTTCTCTCGGAGACAACCGAGGATTACAATTCCCCGACAACATCCAGCTTCACCACCCGACTGCAGAGCTGCAGGAACACAGTGAATGTGCTGGAGGAGGCTTTGGACCAGGATCGAACCTCCCTGCAGAAGGTGAAGAAATCAGTGAAGGCCATCTACAATTCAGGACAGGACCACGTCCAGAATGAAGAGAACTACGCTCAGGCTCTGGACAAATTTGGCAGCAACTTCATCAGCCGGGACAACCCCGACCTGGGAACGGCTTTTGTCAAGTTCTCCTCCCTCACCAAGGAGCTGTCTGCCCTACTGAAGAACCTGCTCCAGAGCCTCAGCCACAATGTGATCTTTACTCTGGACTCGCTGCTGAAGGGCGATTTGAAAGGCGTGAAAGGGGACATAAAGAAGCCCTTTGACAAAGCATGGAAAGACTACGAGGCCAAGTTTACAAAGATCGAGAAGGAGAAACGAGAGCACGCCAAGCAACATGGGATGATCCGCACTGAGATCACCGGGGCTGAGATCGCCGAGGAGATGGAGAAGGAGCGGCGTCTCTTCCAGCTCCAGATGTGCGAGTACCTCATCAAAGTAAATGAGATCAAGACCAAGAAAGGAGTGGACCTCCTCCAGAACCTGATTAAGTATTACCACGCACAGTGCAATTTCTTCCAGGATGGCTTGAAGACTGCGGATAAGCTGAAGCAGTACATTGAGAAGCTGGCAGCTGAtctctacaatATCAAACAAACTCAGGATGAGGAGAAGAAGCAGCTGACTGCCCTGCGGGATCTGATCAAGTCCTCCCTCCAGCTGGACCAGAAGGAGGACTCACAGAGTAAGCAGGGTGGCTACAGCATGCACCAGCTGCAGGGAAACAAGGAGTTTGGCTGTGAGAAGAAAGGTTACCTGCTGAAGAAGAGTGATGGGCTAAGGAAGGTGTGGCAGAGGAGACAGTGCTCAGTGAAGGGGGGCATGCTCACCATCTCTCATGCCACATCCAACAGGCAGCCGGTCAAACTCAACCTGCTCACCTGCCAGGTCAAGCCGAGTACTGAGGACAGGAAGTGCTTTGATCTCATTTCTCATAACCGGACATATCATTTCCAAGCTGAAGATGAACAAGAGTTTGTCATCTGGATCTCGGTGCTAACCAACAGTAAGGAGGAGGCCTTGAACATGGCGTTTCGTGGCGAGCAGAGCAGCGGAGGCGAGGACGGTTTAGAGGATCTGACCAAAGCCATCATAGAAGACGTGCTGCGCATGCCAGGCAACGAAGTCTGCTGTGACTGTGGAGCTGCAGCTACAAATCCCCTGCAGCCTTCAACAaacgtgtgcgtgtgcgtCATGCACTCTATGAGCCATCGCCAGCTCGCATCTGTTTATTATATGGGGGCCAGATCCATGGAGCTCGACAAGCTAGGAACCTCAGAACTCTTGcTGGCCAAGAATGTAGGGAACAGTAGTTTCAATGAGATCATGGAGGGAAACCTCCCGTCACCTTCACCAAAGCCCATTCCATTCAGTGACATGACGGTGAGGAAGGAGTTCATCAACGCTAAGTATGTGGACCACAAGTATGCAAGGAAGACGTGCACGTCTGCGTCAGCTAAAATGATCGAGCTGTTTGAGGCGGTTCAGTCCAGGGATCTGCTGTCCCTCATCCAGGTCTATGCAGAGGGGGTTGAACTTATGGAGCCGATCCCAGAGGTTGGACCGGAATCCGGAGAGACAGCACTGCACTACTCTGTACGGACTGCTGACCAGACCTCACTGCATTTAGTGGACTTCCTTGTGCAGAACAGCGGCAACCTGGATAAGCAGACGGAGTGGGGGAACACCGCCCTGCATTACTGCAGCATGTACGAAAAACCTGAGTGCCTCAAGTTACTCCTGAGGGGAAAGCCGGCTACTGATATCAccaatcagaacggaGAGACGGCGCTGGATGTTGCCAGGCGACTGAAGAACACTCAGTGTGAGGAGGCActtGTGCAGGCTGCAGAGGGGAAGTTCAACCCTCACATTCATGTGGAGTATGAGTGGAGCCTCAGATTGGAGGAGATGGATGAGAGCGATGACGACCTCGACGATAAGCCCAGTCCCATCAAGAAGGACCGCTCCCCGAGGCCTCAGAGCTTCTGCCACTCCTCCAGCCTCTCCCCCCACGACAAGCTCTCCCTGCCGGGCTTCATCAGCCAAAGGGACAAACAGCAGCGTCTGTCCTACAGCGCCTTCACCAACCAGATGTACAGCGCCTCCACCGACCTCACCTCCTCCCCCGTGGCCGACGGGCCGCCGCTGCCACCTAGGAACCAGGGCAAAGCTCCTCACTTGGCATTCCTTGGCTCTCATTCGCACTACGCCACACTGGCTGGCACTCGACCATACATCActcctcccccaTCTGGCCCTTCCTCTACACTCACACCAGGAGGCAGCTCCACCCTGTCCAAGAAGAGACCTCCGCCCCCACCTCCTGGACACAAACGCACCCTGTCTGACCCACCCAGCCCGCTCTCTCACAGTCCACACAGTAAAGGGGGCTTGACTGGGGGAAGCGACTCCACCCCTCCTCCTGTCAGCAAGATGTCTCCTGTTTCTAACAAGTTTGAAGGAATTCCTCAACAGCAAAGCACTACTTCAAGCAACACAAAGTCTACACTTGGTCCAAGGGTTCTTCCCAAACTACCTCAGAAAGTGGCATTGCGAAAGATTGACACCATACACCCATCTATGGATAAGCCCAGCCATCCTCCAGAGGTCTTCCAGAAGTCCCCGCCGGCCACCGACACCCCACAGAAGGCTCCTCTGGCAGACAGGCCTCAGCTGGGAGACCTGCCCCCCAAACCACAGCTGTCTGAACTTCCTCCTAAACCTGGAGAACTTCCTCCGAAGCCACAGCTGTCTGACCTCCCTCCTAAACCTCAGCTGGGAGACCTCCCGCCTAAACCCCAGCTCAAAGACCTGCCTCCCAAGCCTCATCTCGCAGACATCCCCCCAAAACCCGGAACAACCGAGTCCACTCCCCGGCCACCTCCCGGAGAGACAGTGCAAAGGCCTCAAACGcaacctccacctccacctcagCCTCAACCTCAGCCTCAAGACTCACCGTCACCTAATCAGCAAGCAAATATAGGGACCCCCATCCAACAAGCTGCTGAAGACACCAATGGGACCCCAACAGGGACTGCAGAGACACCAGTGCCCCTCCCAAGAAAGATCAACACGGGGAAAAGCAAAACCCGTCGGGTGAAGACTATCTATGACTGCCAGGCTGACAATGATGACGAACTGACTTTTGTTGAAGGAGAGGTGATTATAGTTACAGGAGAAGAGGACCAGGAGTGGTGGATCGGACACATTGAAGGAGATCCGGAAAGAAAAGGGGTGTTCCCCATGTCTTTTGTGCACATCCTGAGTGACTGACAGCCATCGAGACTTGCACTACGCCTCTCCCTAAATTGGGAGGTCCTGTAAATAGCTATTATAACACCTCTTGTCAAACGACAAGTGtcctaaagaagaagaaaaaaagcaacaaagaaGAAACCCAAGAAAGCTCATCTAAGCCATGGATGCCTCATCCATGCTGTACAAAGAATGTGTGTATTCTTCCTTTACCAGTATTATCTTAACCCTATAgcatggctgtgacaaagcCACTCTCAGAACCCTAGCACTTACCTAAAGTCTATGTTTATGCTgttactgtgtatatatgtatgtaaatatatatatgtgtgtgtaagtgtacaTGTTTTATTGTACAAAACATGTACCATTGCTCTCTGTCAGATTAAGCATCAGGGTGGTAGACTTTGAATTTTATCTGTATTGATTTTACTGGCCCTCAAGTAATTAGCTTATATTTCTGGAAAAAGGTCAAATAAGGAATGTAAAATAGGTCATGTCACTATTTTTGTCTTGCATCCCTGTTTACCACCTTAATTGACTGAAGAGGCTGGAGTCTCCCACTGATCTTCCCCGAGatgaaaacattaaatgtaCTCCTTGTTCTTGCTTGCTTTGTGTGTACACGTATTATGGTTGTTTTACAGTATAGAAACCTGCTGCTACTGTGTGGTGGAATATCAAAGCCTGTGGCTCACTGTAGGTCACTGATTTACTCCTTGTTACACTGTTCACTGTATGTATGCTTTGTTTGTGAACTCGACGCCATCTCCACAGTCCTTTGACCTTTTCTGTGCATGGTGTAACAATGACTGGAATTGAGTGGAGTGCTGTGTTCAGAGACGCTCACCTCAGGGTTTGAAGAGCCACTATTAAGCAGGACTTCACAAAAAATGTATCCTGTTAAAGCCACTATTAATGACAAGTACAGGAAACTCAAGGACATCATAGCAATAACTTGATTTTCTGGACAGGCTAGAAATTTCACATTAACTTGTGTTCATAATTCAGTGTCTTGTAAAAACCTCATGAGCTTGAAATGTTTTGAGTTATGTAATATCATTCCATGTTACTGGATCCAGTACATTGCCAGGTTTGCCTGTGAACCAGAGATGTCTTTTAGCACAGTGGACTTTGTAAAAGGCTGGAGACCCCATGTATTTTCACCCAGTCCTCACTGATTGCAGTCTTTCCCCCCCCCATTAGGAACAAACCTATCAACCCATTGTATCAATTAAAGTGCTGTACTTAACTGA

Function

GO: NA

KEGG:

id description
K12488 ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299185 lncRNA downstream 72236 19446045 ~ 19446294 (-) True G221090
TU299181 lncRNA downstream 78991 19436966 ~ 19439539 (-) True G221088
TU299179 lncRNA downstream 144014 19372591 ~ 19374516 (-) True G221086
XR_005637963.1 lncRNA downstream 201303 19316654 ~ 19317227 (-) True LOC120552156
TU299033 lncRNA downstream 475314 19040265 ~ 19043216 (-) False G220972
TU299256 lncRNA upstream 15258 19600706 ~ 19600939 (-) True G221138
TU299262 lncRNA upstream 66906 19652354 ~ 19656460 (-) True G221143
TU299268 lncRNA upstream 84256 19669704 ~ 19669954 (-) True G221146
TU299271 lncRNA upstream 93620 19679068 ~ 19730782 (-) True G221149
TU299286 lncRNA upstream 133000 19718448 ~ 19719622 (-) True G221160
XM_039790486.1 mRNA downstream 4493 19475880 ~ 19514037 (-) True fam49bb
XM_039789932.1 mRNA downstream 187976 19315583 ~ 19330554 (-) True ankha
XM_039789935.1 mRNA downstream 187976 19317254 ~ 19330554 (-) False ankha
XM_039790862.1 mRNA downstream 304878 19196583 ~ 19213652 (-) True vps41
XM_039790858.1 mRNA downstream 323007 19182050 ~ 19195523 (-) False LOC120552661
XM_039789763.1 mRNA upstream 54408 19639856 ~ 19648801 (-) True chpf2
XM_039789762.1 mRNA upstream 73441 19658889 ~ 19666720 (-) True si:ch73-173p19.1
XM_039790437.1 mRNA upstream 304234 19889682 ~ 19908076 (-) True kif9
XM_039789853.1 mRNA upstream 364533 19949981 ~ 19954961 (-) True cdv3
XM_039789854.1 mRNA upstream 364533 19949981 ~ 19954960 (-) False cdv3
TU299133 other downstream 191636 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 569049 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 887055 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 893732 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2643230 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 1250849 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2404569 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2617335 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2617335 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 5377997 24963445 ~ 24967990 (-) False msl2b

Expression Profile