RNA id: XR_005637949.1


Basic Information

Item Value
RNA id XR_005637949.1
length 1355
RNA type transcript
GC content 0.52
exon number 9
gene id zgc:101569
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 10769375 ~ 10815975 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTCACACCTTCATTTCAGAGTTGTGTTGAAGTTAGTTAGCTAGCATACTGCGTGAAGAGTAGAACGTATAATGCTCATTTTTACAGTCATTATAAATAATTTGTGAAATGCGTTAGCGCTTAATTTGTTTATGAGTTTAGCTAGAGCGTCTACGTTTTTCATGTGAGTGAGTGTTAGCAATGGCGCTGAAGTATTTTAGGACATTGAGACCAATTTTAAGGGCTACCTATCACAGGAAAACATTTGGACAGTCGATAAAGGCGAGCTTGTTGACAGTTAAATACTACAGCACTGCAACTGGAGGTGAAGACGCAGGAACAGTTGCGGGACAGACTGTGGTCACAGAGCGCAGGGGGTCCGTGGTTACCGTGGCGATAAACAGACCCGAGGTGCGTAATGCGGTGAACCAGGAGACGGCGAGGCGTCTGCTTGAAGAGCTGGAGGCCTTCGACAGTGACCCAGACTTACACGTGGCTGTCCTGCATGGGAAAGGAGGGAATTTCTGTGCTGGTTATGATCTGAAAGAGCTGGCCAATCACCCTGCCTCCCTCAAATTGGAGCAAGATGTCACCAAGGGTCCCGGTCCGATGGGTCCCTCCCGTTTGGAACTGTCTAAGCCGCTGATAGCAGCAGTCAGCGGCTTTGCTGTGGCTGGAGGGCTGGAGCTGGCTCTGCTGGCAGATCTGAGAGTGGTGGAGGAGAGCGCCGTCATGGGGGTGTTCTGTCGCAGGTTTGGAGTTCCTCTGATTGACGGAGGCACAGTGCGGCTCCCGCGTCTCATTGGTCTGTCACGAGCCCTCGACCTGATTCTGACTGGACGACCAATCGGAGCGCAGGAGGCTCTTGCCTACGGACTGGCAAACAGAGTTGTTCCAAATGGCCAAGCTTTACAGGCAGCCTTGCAGTTAGCAGAGCAGATCCGCTCCTTCCCTCAGCAGTGTCTGCGGGCCGACCGCTCCTCAGCCATGTACAGCTGCTACGATGCTCCCTCCttcacacagGCCATGCAGTATGAGATCGACCACGGAATTCCTGTCATCCAATCAGAAGCTGTCACCGGGGCAACCAGTTTCACTACTGGAGCAGGAAAAGGAGGGAAATTCTTCTAGGAATTAGTTTGCAGAGGCCTTGTGCATTTCAGATAAGATAGGCTCTGGCAgtagcagagacacagagagagatatgGACACCTTTGGACCTTATCACCAGGACCATCACAGTTTGAAGGGGCCATGAAGACACAACACAGTGGAGTACGACAGGGAGCTCTCTCCGCAGCGGCGTCACCACAAGGAGTTTAAGTTCAACCTCTCGCAGATCCCAGAGGGCGAGGCCATCACCGCAGCAGAGTTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296361 lncRNA upstream 50084 10718353 ~ 10719291 (+) False ipo4
TU296360 lncRNA upstream 50084 10718412 ~ 10719291 (+) False ipo4
TU296239 lncRNA upstream 104592 10632987 ~ 10664783 (+) True G218908
TU296242 lncRNA upstream 109936 10640646 ~ 10659439 (+) True G218910
TU296230 lncRNA upstream 169574 10591619 ~ 10599801 (+) True G218899
TU296433 lncRNA downstream 59074 10875049 ~ 10946088 (+) True G219046
TU296434 lncRNA downstream 89411 10905386 ~ 10946088 (+) False G219046
XR_005638011.1 lncRNA downstream 140633 10956608 ~ 10969329 (+) True LOC120552466
TU296507 lncRNA downstream 562662 11378637 ~ 11477907 (+) True G219099
XR_005637978.1 lncRNA downstream 667293 11483268 ~ 11486592 (+) False LOC120552242
XM_039790507.1 mRNA upstream 174 10744678 ~ 10769201 (+) True pdcd6
XM_039790508.1 mRNA upstream 174 10744680 ~ 10769201 (+) False pdcd6
XM_039790926.1 mRNA upstream 50061 10703138 ~ 10719314 (+) True ipo4
XM_039789699.1 mRNA upstream 73766 10686028 ~ 10695609 (+) True tm9sf1
XM_039789701.1 mRNA upstream 73766 10686028 ~ 10695609 (+) False tm9sf1
XM_039790013.1 mRNA downstream 524352 11340327 ~ 11342705 (+) False tmem14ca
XM_039790014.1 mRNA downstream 524375 11340350 ~ 11342705 (+) False tmem14ca
XM_039790012.1 mRNA downstream 524516 11340491 ~ 11342705 (+) True tmem14ca
XM_039790890.1 mRNA downstream 541582 11357557 ~ 11368065 (+) False plcxd2
XM_039790891.1 mRNA downstream 541583 11357558 ~ 11368065 (+) False plcxd2
TU296191 other upstream 243171 10523438 ~ 10526204 (+) False dcaf11
TU296196 other upstream 274387 10488267 ~ 10494988 (+) True G218875
TU296163 other upstream 346126 10422586 ~ 10423249 (+) True G218848
unassigned_transcript_1412 other upstream 536818 10232486 ~ 10232557 (+) True trnac-gca_34
TU295978 other upstream 1310675 9458183 ~ 9458700 (+) True G218695
TU296470 other downstream 524423 11340398 ~ 11342688 (+) False tmem14ca
TU296473 other downstream 531207 11347182 ~ 11348405 (+) True G219081
TU296500 other downstream 570182 11386157 ~ 11395402 (+) False phldb2b
TU296513 other downstream 589760 11405735 ~ 11415466 (+) False phldb2b
TU296517 other downstream 600048 11416023 ~ 11418476 (+) False phldb2b

Expression Profile