RNA id: XM_039789657.1


Basic Information

Item Value
RNA id XM_039789657.1
length 6489
RNA type mRNA
GC content 0.48
exon number 25
gene id slc12a7b
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 2458659 ~ 2558626 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTGAgtgtctgcgtgtgtttgtgttccgTTGGAGCTGTCCTGTGTGTTCGCTCTCACGGAGTGTGAACCGCGGAGGTAAGCCGCAGGCTGTGCTTTTCCTCCATTAAAAGTGCGACAAGAGGGGAGAAGACGGACATGGGCGAAAGGTTTGTGGTAGTCCCCGTTGACGGAGGAGTTGGGGTCGCCAGGGACGGGGAGCACGACCCGGCACCAGACaccggcggcggcggcggcggcagcagcagcagcgggggTGTAACAGTGGAGGAAAAAGAGGCGGGGGAGGACAGCGTGTTCGAGCCGCAGGACCCCAACGTTGTGGTACCTATCTTAGAGTACAACAGGGAGCCCAACAAGTACGGTGATGGCGTCCCAAAGGAAAACAGTCCCTTTATCAACAACACAGACAATGACAAAGGCAACAGCTACGATGGCACCAACATGGCCCTTTTTGAGGAGGAGATGGACAGCAACCCCATGGTGTCATCTCTCCTCAATAAACTGGCAAACTACACCAACCTCACCCAGGGGGCCCAGGAGCACGAGGaagctgatgatgatgaagggCCCAAGAAGAAAGCTGTTAAGAGCCCTCAGATGGGGACCTTCATGGGTGTCTACCTCCCCTGCCTCCAGAATATACTGGGGGTCATCCTGTTTCTGCGTCTTACCTGGATTGTCGGCACTGCCGGCATCTTGGAGTCCCTGGCTATTGTCTGCTTGTGCTGCTCTTGTACCATGCTGACAGCCATATCCATGAGTGCAATCGCTACTAATGGTGTTGTGCCAGCTGGAGGCTCCTACTATATGATCTCCAGATCTCTGGGCCCAGAGTTTGGTGGAGCTGTAGGTCTCTGTTTCTACCTGGGCACAACCTTCGCCGGCTCCATGTATATTCTTGGTACTATAGAGATTCTGCTGACCTACATTGTGCCTAAAGCAGCCATCTTTGTGGCCGAGAGAAAGGAGGACGAGGTGGATGCCCTGCTGAATAACATGCGTGTTTACGGCACCTGCTGTCTAGCACTGATGTCCGTGGTCGTCTTCGTAGGGGTGAAATATGTCAACAAGCTGGCACTAGTCTTCCTGGCCTGTGTCATTCTCTCCATCTTCGCCATCTATGCTGGAGTCATCAAGAGCATCTTTGAGCCGCCAGACTTTCCTGTTTGCATGTTGGGGAATCGCACTCTGCAGAACCACAACTTTGACAGTTGTCTCAAGACGGTGGTTATAGACAACGTGACCGTCACTACCAAGCTGTGGAAGCTGTTCTGTGACGGACCTGAGCTCAATGCCACCTGCAACGACTATTTTGTCCAAAACAATGTGACCGAGGTGCAGGGCATCCCAGGACTGGCCAGCGGAGTTATTTCAGAAAATTTGTGGTCAGAGTATGGCCCTCTGGGTATGTTGGTAGAAAACAAGAAGCTGCCATCTCTTGGGGAAGTAGACTCTGCCCAGGACATCTACATGCCCTATGTGGTCAATGACATCACCACCTTCTTCACACTGCTAGTCGGCATCTACTTCCCGTCGGTCACTGGTATCATGGCTGGTTCAAACCGGTCAGGTGATTTGCGGGATGCCCAGAAGTCTATCCCCATTGGGACCATCCTGGCTATCGCTACCACCTCCTTCATCTACGTCACCTGTGTGATTCTATTCGGTGGCTGCATTGAGGGAGTTCTGCTACGAGACAAATTTGGTGACGCAGTGAAAGGGAACCTTGTTATAGGCACACTATCATGGCCCTCACCCTGGGTTATTGTGATTGGCTCGTTCTTCTCCTGTTGTGGCGCGGGGCTACAGAGTTTGACTGGCGCCCCGCGCCTGCTGCAGGCCATCGCACGAGATGGCATCGTGCCTTTCCTGCAggtGTTTGGTCATGGGAAAGCTAATGGAGAACCTACCTGGGCTCTGCTGTTGACTGGTGGGATCTGTGAGATCGGTATCCTCATCGCTTCCCTGGACGCCGTGGCTCCCATTCTCTCCATGTTTTTCCTCATGTGCTACTTGTTTGTCAACCTGGCCTGTGCAGTTCAGACCCTGCTACGGACGCCGAACTGGAGACCACGCTTTAAATACTACCACTGGGCTCTGTCCTTCCTGGGAATGAGCTTGTGTCTTGCTCTCATGTTCATCTGTTCCTGGTATTATGCTATTGTGGCCATGGCGATCGCTACGTGCATCTACAAATACATTGAATACAGAGGGGCAGAGAAGGAGTGGGGAGATGGCATCCGGGGCCTGTCTCTCAATGCTGCACGTTATGCCCTCATTCGCCTTGAGGAGGCTCCACCACACACTAAGAACTGGAgGCCTCAGTTGCTGGTGCTCCTGAATGTTGACTCAGATCAAGGAGTCAAACACCCCCGCCTGCTGTCCCTCACCACTCAGCTGAAGGCGGGGAAAGGCCTCACGATAGCAGGGAATGTTTTAGAGGGAACCTATCTCACCAGAGATGCCGAGGCCAAGAAGGCTGAGCAGAACATCAAGTCTGCCATGTCAGCAGAGCGAACAAAGGGTTTCTGCCATGTCGTGGTGTCTTCGAACCTCAGAGATGGTGTCTCCCACCTCATCCAGTCTGCGGGGCTGGGAGGCATGAAGCACAACACAGTCCTAATGGCCTGGCCTGGGAACTGGAGGCAGTCCAATGACCAGCAGTCGTGGAAGAACTTTATAGAGACGGTGCGAGAGACCACAGCAACCCATCATGCCTTGCTTGTGGCCAAGAATGTGGACAGTTTCCCCACCAACCAAGAGCGCTTAGCGGAGGGCACCATCGACGTGTGGTGGGTGGTTCACGATGGAGGCATGCTGATGCTGCTGCCCTTCCTGCTGCGACAGCACAAGGTGTGGAGGAAGTGTAAGATGCGTATCTTCACCGTGGCCCAGATGGATGACAACAGCATCCAAATGAAGAAAGATCTCCAGGTGTTCCTTTACCACCTGCGACTGGATGCAGAAGTGGAAGTGGTGGAGATGCATGATAACGACATCTCAGCCTTCACCTATGAGAAGACACTGGTGATGGAGCAGAGGTCTCAGATGCTGAAACAGATGCAACTTTCCAGGaccgagagggagagagagATTCAGAGTATCACTGACGAATCGCGTAGCTCAATCCGGAGGAAGAACCAGGGCGCTGCCCCGAGCACGAACCTCAGCACGCAGTCCTCAACGGTGGAGGACATTCACGAGGACGAGGCCCAGCTCATCCATGACAGAAACACAGCGTCTCACGCTGCCATAAATGACAAGGCCGACACTGGGCCCGATCGGGTTCACATGACCTGGACCAAGGACAAGCTCTTCACAGAGCGTAATCGTAACCGAGAGTACAATGCCAATGTGGCTGTACGCGACATGTTCAACATGAAACCGAACCAGTCCAATGTTCGCCGGATGCACACAGCTGTCAAGATGAACGAGGTGGTGGTCAACAAGTCGCAGGGGGCTCACCTGGTTCTGCTCAACATGCCCGGACCACCAAGGAACAGAGGAGGAGACGAAAACTACATGGAGTTCCTGGAGGTTCTCCTCGAGGGTCTGAACCGGGTCCTCCTGGTCCGAGGCGGCGGCCGCGAAGTCATCACCATCTACTCTTAACAAAAAACCAAACCTCTCACGCCCCACCCTGCACACGAGCTGCTGCCATGGATACCGGTCACCAGGCATTTTCGGGGAAGAAGcctaatttgttttgttttcatggaAGGCGGGGTTGTTGTAAGGCGGGACCACTTGTGATTGACAGATGGTTTGAAGGACCCCAGGATGAAGGAAACAGCGTTGAATCGGTTGACTGGCTGGGAGAGCGGCCCCAGTGTGTGTCCACGCTGGGCCACAGCAGCCCCGCATGTGGAAGATAGAGCATAGAGACACTTTATATTGTTCGTTTAACTCTGAAAAACATTATTTGTCCTATTACATGTTCATATTCTTTCCCTCTTGTGTCGATGTTGTCATGTTACTGGCACTCACTGTTTAAAGCAAAGAAGTGTGTGCTGATGATATGACCCTCGTAGTCTTTATGTTTACTGggcctgagaaaaaaaacatgcacagaGAGAACAAGTTACGTAACAACTCATACTGGATTTTCAAATATTACAGTTTGGTGGTCTGTATGTTCTGCATCACCATTTGTgctaaatgttttcattttaaataattaGGAAACTGGCTTCAGTCTGAACTACAGAGAGGGCGGGCAGTCTGTTTAGAAGCTTCTAGAACGTCCTGGTTGGGGTTGTAGAGCCGCCAACGTTGTCCTCCCTAAAGCAGCATTTGTAGTTGGAGTGTTCTGTAGTTGTTCGCCTTTTAAATCATGTAGTGAAGGGCCGGGAGTCCGGGAGGATGCTGAACGTGCACCACATGTTGGATCACCTTCTGTTAAGTGGATGGGAGCATTTTCAGATATCTGGTACCGATATGTGATCTTGAACATCCCACCCTCAAAGGACACTATTGTTTTATTAGGGAAAACAGCCATAGTTAATATTCTGGGACCCTTTGTAAGCTTTATAGAATGACATATCAAACGCACATGTATACATATTTATGGTAAGAGAAGTAGTGTTCAGTTGGGAGTAACTAtagatttatgttttttttaatccaaggGCTGTTTGACAGCATGCAGGAGCTTAATGAAATAGTCGATTGGCTAATTGGTTTGCAcatgaaatgtttattttgccCTCAGAATTGTTGTTGGCATTTAACAAATTGCTAAATGTAAAAGCACAAATTGACACGTCAATTAGTGTAGTTCTTCACCTATCGGCGTAGTTACAGCACTGTTGACTTTGCACTATCGATCGTTTAGGCTTTAATTCATCGTGTACTCTCACCTGGTTCTATCGCCTACACTTGACAGTGGTCAAAACACCGCTACATTCTTCTTACATAGGTGGAGCGAGATACGGATAAATGACCTCCTGAAAAGAGGACGCAGGCAGCAAGTAATTCCATTCTATCTAATACttgtgtttaaatgttgtttttataatgttttagcGAACAACACCCTTCAGGCTTTGAGTCCCAGAATGAGTAGATTCATTGTAATGAGCATGTGTAGGATTAAAAGTGCCAAAatcacaaaagaaagaaagaaactgtGTGAGTCTTATGCAGTAGCCACCGCTTTTTACATtgacaatctttaaaaaatgaaaagcacaagttttttttttaaatcttttgatAGAGCTCATCCCTGCCTGCATTCTTTTAAAATTCAGCAAAGTAATAATTGAGTCAATGGAACTCACAGTGCAATTCCCAGGGCATTTAAACCCATCTAACATGGGCTAAATGCTGCAGAAAGATGTTGTGTAAGAGTAAAGAGGAGAAGCAAATTCAACTCTTTCTCGTGTATCTccacagtttcttttttttcttcaaattagcTGTGCAGTATTTTGTAAAGCAGAACGTTGTATTATCCTGCACTTCTTTGCAGGGAAATGATGACTTCTGATTGTCAGTTATGCAACAtcagtgttttattgtgttttgttcaGTTTTTCATATATGCCTGTGTAACTATATAGTTGTGTTCTATGTAGTCTTTGTTACATTATAATTGATCCTCTGTAACTTTGTGTTGTTCATTTTCAGTGTGATTTTTATggaaggaggcagagagaggcgGTATGTGTGAAGACGGCAGCAAATGTCacgtttttgtgttttgttcaacacagcatacacaacacacaggaCTGGAACCCTGGACTCAAAGTATTAAGAAACCAGGGTACaaatgaatggtttaaataaCTCTCACTATAGGAAGTTCAAACTCTTTCAGTTTTATATTTGTAGCCACCAAAGATAAAACATAGTcctgtataaataaacttgacatTGTCTACTTTTAATAAGTTTGAAACATTAAAAGATGtaaagataaattatttaaaaagtttCCTTGTTCTTGAATTTGGTGAGTGAGATGAATAGCAGTAGCTGTGCTTAAAgagaacatgaaatacatgaaaCCCTAAACAGAAGATGCTAAATAATAACCGAAAATAAAGTTTCTGGAGGTAAATAGGATTGTCAGCAGTGTGTGCTTCTCAGCTCTGATGTTGGAGGTGACTGGAGAATGTTATCTACCTCAAGGTGTCACTGAGGCTCGGctgaagaaataaaaagttGTTCAATCACGTCTCCCTTTCAGAACTAATGTTACATTCATGGAAGGGAAAAAGCCTCTGTGATGTGAGAGGACCAGcagaaaaaagtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcccccgTGCGCACTGTTGTGAGGTGAAGCTGttgtgtttctgctgtttttttctcaGCTGGCAGGCCTCAGGCTGGAACAGGAAGTCACTTGTGGGCACACAGATAGAGGAAGGTAGCCCTGTAAATTGTATTTGTGCCTCTGAGTAATTATTAAAAGTGCTGAAATCAACCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294311 lncRNA upstream 20070 2262547 ~ 2438589 (+) True G217449
TU294312 lncRNA upstream 20779 2431757 ~ 2437880 (+) False G217449
XR_005637954.1 lncRNA upstream 42193 2409885 ~ 2416466 (+) True LOC120552009
XR_005637951.1 lncRNA upstream 103303 2352859 ~ 2355356 (+) True LOC120552006
TU294335 lncRNA upstream 103564 2351351 ~ 2355095 (+) False LOC120552006
TU294360 lncRNA downstream 5037 2563663 ~ 2563878 (+) True G217489
TU294353 lncRNA downstream 113312 2671938 ~ 2673750 (+) True G217482
TU294510 lncRNA downstream 443224 3001850 ~ 3003104 (+) True G217604
TU294518 lncRNA downstream 450563 3009189 ~ 3011361 (+) True G217608
TU294519 lncRNA downstream 450563 3009189 ~ 3011592 (+) False G217608
XM_039789617.1 mRNA upstream 20060 2426160 ~ 2438599 (+) False aoc1
XM_039789618.1 mRNA upstream 20060 2426194 ~ 2438599 (+) True aoc1
XM_039789614.1 mRNA upstream 145233 2258920 ~ 2313426 (+) True LOC120552004
XM_039789603.1 mRNA upstream 929350 1523394 ~ 1529309 (+) True LOC120551998
XM_039790086.1 mRNA downstream 9039 2567665 ~ 2615901 (+) True gfod1
XM_039790939.1 mRNA downstream 66060 2624686 ~ 2672738 (+) True LOC120552716
XM_039790940.1 mRNA downstream 66454 2625080 ~ 2672738 (+) False LOC120552716
XM_039790616.1 mRNA downstream 121010 2679636 ~ 2772686 (+) True arhgap12b
XM_039790617.1 mRNA downstream 121010 2679636 ~ 2772686 (+) False arhgap12b
TU294210 other upstream 783259 1669162 ~ 1675400 (+) False G217377
TU294211 other upstream 783259 1671847 ~ 1675400 (+) True G217377
unassigned_transcript_1282 other upstream 807011 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 807519 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 808988 1649598 ~ 1649671 (+) True trnan-guu_44
TU294514 other downstream 447657 3006283 ~ 3021642 (+) True G217606
unassigned_transcript_1283 other downstream 609117 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 610161 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 610459 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 622672 3181298 ~ 3181369 (+) True trnag-ucc_36

Expression Profile