RNA id: XM_039789665.1


Basic Information

Item Value
RNA id XM_039789665.1
length 6046
RNA type mRNA
GC content 0.49
exon number 41
gene id prex2
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 15360595 ~ 15457219 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGGATGAAATTTGTAGGAGTCACATGAACGTTGTAACTGGTATCCACTTGTTGCACGCTCTTCAGTCAGGCTCTGTATTAAACTGTCTCGCACTGTtgaatcgttttttttatttcattttttaaacttgCTTTTCACGCGTTTTTATCCGGGAATTGTTGTTCTACTCTCCGTGGACTTCCAGTGCAGACACCGACACGGTTGCCCTCAGTGTTTACCATGCTGCAAACTTTACACAACTGAAACCTGTTTTGTGATGTGAAACGTTTGCCGAAGGAAATAAGGTTAAGCGTTAATTTAGTCACCATGACTGAGGAGAGCAGAAGTGAGCACAGAGCTGAGAGCGGGAAGGACTTGGAGAAGCAGCTCCGGTTACGAGTGTGCGTCCTAAATGAACTTTTAAAGACCGAACGGGATTACGTTGGGACACTAGAGTTTCTCTCGGTGTTTCTACATCGTCTCAACCAGTATGCAGCCACCAAAATCGACAAGAACATCACAGAGGAGACCGTTAAGAGGAGCCGTTTCCAGATTTATGATGAATACTGCGGGAATCATGAGAAGGCCCAGAGACTGCTGCTGGAGCTCAATAAGATCAGGAGCGTCCGGACATGTTTACTGAACTGCATGTTGCTGGGAGGCAGAAAAAACACGGAGGTCCCCCTGGAGGGTTACCTAGTAGCTCCTATTCAGAGGATCTGCAAGTACCCATTGCTGCTTAGAGAGCTGCTGAAAAGAACCCCTAAGAAGCACAACGACTACGCCCTGGTGCTGGAGTCTCTGCAGGTGATGAAAGCTGTGTGCTCCAGCATCAACGAAGCCAAGAGACAGATGGAGAAGTTGGAGATTTTGGAGGAATGGCAGTCCCATATCGAGGGCTGGGAGGGCTCCAATATCACAGATACATGCACGGAGATGCTCATGCACGGAGTCCTCCTAAAGATTTCAGCTGGAAACATTCAAGAGAGGATTTTCTTCCTGTTTGACAAACTTCTGGTCTATTGCAAGAAAAAAAACCGGCGTTTAAAAAACAGTAAAGCGGCCACAGAGGGTCCTCGCTACCTGTTCAGAGGGAGAATCAACACGGAGGTGATGGAGGTGGAAAATGTGGATGATGGCACGGCTGACTACCACAGCAGTGGGAACATAGTTAACAACGGCTGGAAGATCCACAACACGGCCAAGAACAAGTGGTTCGTCTGCATGGCCAAGACCCCGGAGGAGAAGCAGGAGTGGCTGGAGGCCATCATGAAAGAGAGGGAGCGAAGGAAAAGTCTGAGGCTCGGCATGGAGCAGGATACGTGGGTGATGGTgtcagaaaagggagaaaagcTCTACCCCCTCATGGCCAAGGGTAACCTCATAAAGGACCGTAAACGCAAGCTCACCACTTTCCCCAAGTGCTTCCTGGGAAGTGAGTTTGTGTCTTGGCTGATGGAAATCGGTGAGACAGGCAACCCAGAGGAAGGGGTTCACCTAGGTCAAGCTCTGCTGGAGAATGGAATCATTCACCATGTCACAGACAAACACCAGTTCAAACCTGAGCCTGTACTGTACCGATTTCGCTACGACGATGGCACCTACCACCCCAGAAGTGACATGCACGATGTCATATCTAAGggCGTTCGGCTCTTCTGCCGTCTTCACAGCCTCTTCACTCCTGTCATCAGGGATAAGGACTACCATTTGCGGACCTACAAATCGGTGGTGATGGCCAACAAGCTCATAGACTGGCTTATTGCACAGGGGGACTGCAGAACCAGGGAGGAAGCATTGATCTTGGGGGTGGAGCTGTGCGACAATGGCTTCATGCATCACGTGTTGGAAAAGAGTGAATTCAAGGACGAGCCATTGCTGTTTCGTTTCTTTGCTGATGAGGAGATGGAGGGCTCCAACACCAAACACAAACCTATGAAGCACGACTTGAAAATAGTTGAGAACGTCATCTCCAAGTCTCTCCTGATAAGGCCCAGTGATGGAGACTACGGCTTTACCCtggaagagagaaacagagtcCCTATCATCAAATCTGTAGAGAAGGGCTCCCCAGCTGAGATGGCTGGCCTGGAGGTGGGGAAGAAGTTGTTTGCCATAAATGGTGACCTGGTGTTCCTCAGGCCTTTCCCTGAAGTGGAAGTTCTCCTTAGGCAGTGTTTTAACAGCAAGGGACCCCTCAGGGTGCTGGTTAGCACCAAGCCAAGAGAGACGGTTAAGATCCCTGACTCGGCAGATGGGTTGGGTTTCCAGATTCGTGGATTTGGTCCTTCTGTGGTCCATGCTGTCGGGAGAGGCACGGTGGCAGCCATTGCTGGTCTCCACCCAGGCCAGTGCATCATCAAGGTGAACGGTATCAACGTAAGCAAGGAGAGTCATGCCAGCGTCATCGCTCATGTCACCGCGTGCAGGAAGTACCGGCGACCCACACAGCAAGACACTATTAAGTGGGTGTACAACAACAGTGAGAGTGCCCAGGAGGACAACCAGAAAACAAACCAGAAACCAAGCCCTGAGGAGAATGGAGACGGCTTTGAGTGTAAAGTAGAagAGGTGATGGACAAATTCAACACTATAGCAATCATCGACGGGAAGAAGGACCATGTAAGTCTGACAGTAGACAACGTCCACCTGGAGTACGGAGTGATGTATGAGTATGATAGCACTGCTGGCATCAAGTGTCATGTGCTGGAAAAGATGGTCGAACCCAAGGGATTCTTCAGCCTCACTGCAAAGATCCTGGAGGCGCTGGCGCGTAATGATGACACGCTGGTGCAGATGTGTGGAACGTTGAGTTCCAGCTGTGATGTGATCCCAGAGGAGCTGCAGGTACGCTTCAGTGCCATGTGTGGTGAGAGGGTGGAGCACATCAACCGGCGTATCACCAACTACAGAAAGTTTGCTCGGGTACTGAAGAACAGAGCATGGCCCACCTTTAAGCAGGCTAAAGCCAAGGTGTCCCCCCTCCATAGCAGCGACTTTTGCCCTACAAACTGTCATATCAATGTGATGGAGGTGTCCTACCCAAAGACTACCACCTCTCTGGGTAGTGCCTTTGGTGTGCAGCTGGACAACAGGAAGAACACACTGGAGAAGAGAGGACACACTAGTGCTGAGCAGGGTAAGCTTAACCCCATGGTCAATGTCCAGCATACTATCACCACTATGGCCGCACCATCAGGTCATAGCCTGGGCAGGACAGAGGGTCATGGCCTTCGCTTCTTGCTCAGAGAGGAAGACCTGCTCACCCTGGATGCTTACCAAAAACTCCTCTACAAACTCACCATGGTGGTCAAAGAGATGGAGACGCACGGTGCCCATATTCATGACCTCTTATCCTCCATCACCCACCCTCCTGCGTCAGAGGCGAGGACCCCAGAGAGCTACATATCGgcagagagcgagggagagaagGGGGAGCGGAACGGGAAGAAAGTGTGTTTTAACGTGGCAGGGGATGAGCAGGAGGACTCTGGACACGACACAATAAGCAACAGAGACTCATACAGtGACTGTAATAGCAACAGAAACTCCATTGCCTCCTTCACCAGTATATGCAGCAGCCACTGTAGCTCCTATGTTCACAGTGATGAGATGGACTCAGGAGATGAGATGCCCTCCAGTGTGTGGCTGTCCCATGATAAGCAGAAGAAACTTCACAGCTTTCTGGAGCATCTGTTTAGCCAGGTGGACTCAATCACCAGCATGCTGAGAGGAGCAGTGGTGGCTCGGGCATTTGAGCAGACCAAATGCTTCACACCTGGAAGAGGATTACATGaGTTCCAGCAGGAGATGGAGCCCAAGGTGAACTGCACCAAAAAGCTGCGTCTCCATGTCAAGCAGGATCCCTGGAACCTTCCCAGCAGTGTTCAGACCCTTACACAAACCATCGCTAAATATGTTGAGGAGGTGAAGACACGGCTGCTCTTGGTCTTACTACAGTATACAGACTCGGAGATCCAGTTGCGCCGAGATATGGTCTTCTGTCAGTCTCTAGTTGCAGCTGTGTGTGCCTTCTCCGAGCACCTACTGGCTGTCCTCAACCAGTTCCACAATGTAGGCAGGGAGTCAGAGCAGGACAGCTCGGACCCCCAGGACCTTCAGGAGGCCCAGGAAGCCAGCCGCCGTTGGCTGGAGCAGATCGCCAGCGCTGGGCTGCTCTTCCACTTCcagtctctcctctcccccAATCTGACTGATGAGCAGGCCATGTTGGAGGACACTCAGGTGGCCCTCATTGACCTGGAGAAGGTCACATTCTACTTCCAGCAGTTTGAAGGGGAGCCGCTGGTCGCCAACATGCCCATGTCATACCAGGTGGAGGGCACCCGTCAGGCCTTGAAAGTTTGCTTCCACCTTGAGAGTTTCTACTTCTCCCAGCTGCCTCACAGGCTGAAAAACGGAGGAGGCATCAAAATCTACCCTGTGCTCTTTACACAAGCGCTGGAGAGTATGGAGGGTTACTACTACAGAGACAATGTGTCAGTGGAGGAATACCAGGCCCAAATCAATGCTGCCTCATTGGATAAGGTCAAACAGTACTACAAGAGACTGAGGGCTTTCTACCTGGACCAGTCCAACATGCCACCTAGCTCTGCACCCAAAGCTGCCATCATAGATAAGTTGATGCGCCCCCTTAATGCTCTGGAGGAGCTGTACCGTCTGATGGAAAGTTTTATCAGTTGTCGCCGCACTGCTGCCTGTCAGTACACTGCCTGCGGGGCTTCTGGAGTGGGGCTGCTCACTGTGGCCTCTGAGCTCTGCTCGCGTCTGGGAGCCACACACATTGTCATGTGCAACAGCGGCGTTCATCGGCTCACACGCCCGTGTTCGTGCGTTCGCCGAATCTGCACCTTGAGTGTGACACTGGAGCAGGCCATCCTGCTGGCCCGAAACCACGGCCTGCCTCCTCGCTGCATCATGCAGGCCACTGATGTCATGAGGAAACAGGGGGCGAGAGTTCAGAATTCTGCCAAGAATCTGGGAGTGAGGGATCGCACGCCGTCATCAGTCCCAAGATTGTACAAGCTGTGCCAACCTCCCCCCCCTGATGGTGACCCATAATAAACTGCATCCAGGAACATGCTGAAGATGCTTTGAGTCCTCCCTCCACCCATGAAGGATCAACCTAATAAAAGACAGTTATCGGGTCCATTTGTATATGTCCACAGTAGCTGTCTGATGTGTAAATAGAATTTTAAAACCGTAAATAGtatttttaatactttatatttttcattgttgtactttatacatattttgagttttttttccatataatgcaTCTGACAAGACAATGACtcagtgaaaaaaaagcataccCTGAGAATGCAGTTCAATTAGCCCAGTGAAATGGAATGAATCCCATCAGTTTACTGTCTGCATATTATTGGCTGAAAatgatgtttgttttcatgaGGGACATTTGCATTTCATGTTATTAGTTTAATTTGCATATGAAATAAGCAAGATAAtattaattaaaacaatatttGGCTTTGTATTATGTTCACGATAGCCAAAAATTTGTCTGCTTCTCGTCAACTCTGGCTATGCTTTATCGATTATCTCAGTATTGGATAAccatatgaatgtgtgttttgtacTTTCCTCAACATGTTTGTTCGCTTGTAAATATACATAtgaagtgtgtgaatgtgtcaaAAGATTCATGCCCTTGTTCCCATTGTGTTTGGATTACATGCATGCACGTGAAGGTTTTCAATGGTTTATCAGTATTAACATATAACAGGTTTTTGGAGGTAGAGCTATGAGATATATTCGGTTATTTCACATTGACAGTACTCAGGATTaaagtgtctctctgtgttactTAGCTGATGTATCATTGTAGATTAATGTCTAGCTCACTACTATGCAAACAAACAAGTGGTAATAAACTGCACCAATAAGCTCCTTAGTGCTTcctatactgtatgtctttGTTACATCCATGTAAAAatggttgattttttttctttgaaaacaCTACGAAAATGCTTtcatgtatacagtatgtaaaccATATATTAAAACTGATAACAATGGAT

Function

GO:      GO:0005089,GO:0032319

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297529 lncRNA downstream 56078 15304311 ~ 15304517 (-) False c22h8orf34
TU297530 lncRNA downstream 56563 15303741 ~ 15304032 (-) False c22h8orf34
TU297422 lncRNA downstream 449122 14909362 ~ 14911473 (-) True G219802
TU297411 lncRNA downstream 486939 14861491 ~ 14873656 (-) True LOC120552749
XR_005638065.1 lncRNA downstream 488161 14861482 ~ 14872434 (-) False LOC120552749
TU297620 lncRNA upstream 96043 15553261 ~ 15632850 (-) True G219939
TU297676 lncRNA upstream 197313 15654531 ~ 15655412 (-) True G219982
TU297675 lncRNA upstream 197382 15654600 ~ 15655412 (-) False G219982
TU297686 lncRNA upstream 219041 15676259 ~ 15680853 (-) True mtfr1
XR_005638019.1 lncRNA upstream 244701 15701919 ~ 15702871 (-) False LOC120552505
XM_039789662.1 mRNA downstream 279 15302985 ~ 15360316 (-) True c22h8orf34
XM_039789814.1 mRNA downstream 59549 15208721 ~ 15301046 (-) False sulf1
XM_039789816.1 mRNA downstream 59580 15208721 ~ 15301015 (-) False sulf1
XM_039789818.1 mRNA downstream 59580 15208721 ~ 15301015 (-) False sulf1
XM_039789810.1 mRNA downstream 59580 15208721 ~ 15301015 (-) False sulf1
XM_039790381.1 mRNA upstream 81985 15539203 ~ 15553049 (-) False LOC120552366
XM_039790384.1 mRNA upstream 81985 15539203 ~ 15553049 (-) False LOC120552366
XM_039790382.1 mRNA upstream 81985 15539203 ~ 15553049 (-) True LOC120552366
XM_039790383.1 mRNA upstream 81985 15539203 ~ 15552680 (-) False LOC120552366
XM_039790386.1 mRNA upstream 82630 15539848 ~ 15553052 (-) False LOC120552366
TU297468 other downstream 311932 15046148 ~ 15048663 (-) False xkr9
XR_005637996.1 other downstream 1420214 13824793 ~ 13940381 (-) False sema5a
XR_005637977.1 other downstream 1663854 13688421 ~ 13696741 (-) True pdk3a
TU296891 other downstream 2166554 13189653 ~ 13194041 (-) False bmi1a
TU296313 other downstream 4691068 10577399 ~ 10669527 (-) True G218950
XR_005637989.1 other upstream 82416 15539634 ~ 15553054 (-) False LOC120552366
unassigned_transcript_1415 other upstream 94402 15551620 ~ 15551692 (-) True trnar-ccg_2
unassigned_transcript_1416 other upstream 188140 15645358 ~ 15645430 (-) True trnaa-agc_30
TU297839 other upstream 511526 15968744 ~ 15973636 (-) False si:ch211-140b10.6
TU297855 other upstream 546661 16003879 ~ 16004764 (-) True G220117

Expression Profile