RNA id: XM_039789686.1


Basic Information

Item Value
RNA id XM_039789686.1
length 4607
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120552041
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8639541 ~ 8712753 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtgtgtgcgcttgcGCTGTTTGTGAGGCAGAGAGTTGCGTGCGAAGGGCTCGACATGTCATTCAGAGGAATCCGCCACCTGAAACGCGAGGAAGTGAAGGCGACTCAATTGGGTATAAAGCATCAGCCAACATCTGCCCCGAGCAGTGCAAAGCTGATGAAAACATCAGATCGGAGCTCACACAGGACCTCTACGATTTATTTGATTTCCCTTGGATCATTTGGCATTACCGAGTCGGTGCACCCAGAGAGAAGCATCACTTTGCTGCACTTTAAGTGAATGTGTCTCCACAGCCATCACTATACTGGAATTAACTGATACCCCCAGGGATTTTGGCGCACCTGTTACCTCCACAGAGCGCGAAATCATGATCCCTCCGGGAGACTGCATGTATGCGGGCAGAAAGAGGAGGAAGCCCGTCCAAAAACAGAAGCCGTCTGCTGCCAATGAGAAAACCAACCCGTCCAAGCGGCACAGAGACAGGCTGAATGCTGAGCTGGACCGGCTGGCCAGCCTGCTGCCGTTCCCCGCGGATGTCATCTCCAAGCTGGACAAGCTGTCCGTGCTGCGCCTTGCAGTTTCCTACCTCCGCGTCAAGAGCTTCTTCCAAGcaAACAATGAGAAGCCCTCCAGGAAGCACGGCATCAGCACAGCATCCTCTAACCCTGAACCCCGGAAAGAGAGCATTCCCCTGGGCACCACCGTCAATGAAAGCAGCCTCCTGCTGGAAtcTCTTACAGGCTTTGCCTTGGTGGTGAGCAGTGATGGCATGGTTTTTTATGCCTCTTCAACCATTGTGGACTATCTTGGTTTTCATCAGACTGACGTGATGCACCAGAATGTGTTTGACTACATCCACATAGACGACCGTCAGGAGTTCAGACGGCAGCTCCACTGGGCCATGTGTCCCCCACAGGGGATGTCAGCACACCAGGACAGCCAGTTAGCTGCAGGGACTGGTGAGGACTTTGTAGTGAGCAGCCTGTTCCATTCTGCGGAGGGAGGGGGAATTCCTCCTGAGCTCTCCTGCTTTCTCAACAGATGTTTCATTGCCAGAGTCCGATGCCTCTTGGACAGCACCTCTGGATTCTTGACTATGCAGTTCCAGGGTCGGTTGAAGTTCCTCCACGGTCAGAAAAAGAAGTCAGCCTCCGGGGCTCTGTTGCCTCCCCAGATGGCTCTATTCTGCATAGGTGTACCCCTCCTACTGCCCTCCATCACTGAGATGAAAATGAAGAACATGTTAATGCGGGGAAAGAAcaagggaggaggtggagggattatCTCTGCACTGGAGCATGATGAGCGAGGGGAACACCTCCGGAGGCATTCCTTCAGTGGAGGAATGGGGGACATTGCcgaccctctcctcctctcctgtcccACTCCTGGGGCTACCCAGCGGGGTCACCACACTCCCTGGACCCCGCTCTCCAAATACAACCTCAAGTACCGCCCTGAGGGTTTCTACAACCAGGAGGAGCCCCTCAACTACTGCAAGTCCACTGTGGATCCCCATAAAGGTGTCAGCCCAGGCCTGGGCGGCGGCTGGCCTCTGCGGCCAAACTCAGGTCCCCTGAGAGCAGGCCAGGGTGTTGGCTATATCCCCTCCAACCGCATGAACAAAGCCGGCCAGTATGGGAAGCCATACCGCCTTTCCCCCAACTGCCACAGCGGCAGAGGTAACGAGGTGTTTGTCTCTAAGCTCTACGGGAACGTCCAGATTCCCACAGACCCAGATGCCTACTGTGTGGACCTGGTGAAGAACGAGAACGGCTACGGCGAATGCTACGATGGCCATCTGATGCCTGAGATGCCACCCATCAAGGTAGAGCAAGACTCGGACTCTGAGAACGGCTGCGATGTCTACGGGCGACCCTGGGCTTGCCGCGACCCAGATGCCATCGACCGCCGCTATGGTAACGGGGTATACGACCAGAGCTCAGGCCTCCATCTCAAATCAGAGGGAGATTATTATGACCCGCAGTACTCGCCCTGTCAGCGAGGGAAAGCAGGAATCAGCCCGCCGTACAACAACGGCAACTATCAGAACTATGCAGTCAACAACAACGGGAACACAACCGGCCGTCTCTTAAAAGGCGACAAAGACTTGGGCAGTAACAATGACAACAGCCAGTTTAGCCCTCAGAGACTCTCTCACTCAGACTCTCTATGCAGCAACCAATCAGTCAACCTCATGGACTATTCACAAGACCCTCACAAGGCCTACATGCACCAGGACTACAACAAGCACAACACTTATGAGTTCAAAGGGCACAGTCTGGTTCACTCGATCAAGCGGGAGCCCATGGACTCCCCCCCGTGGTCTGAGAGCGCTCATGACATGAGCCAGTCCATGATGGTTGGTCCACGGAACGTTATGCCATGTGTTATGAGCACAGGGCACCACAAGTCTAGTCCCTACATTTATTTGCCATAAAAGTGATTAGTGCAAACACAGAAGATAATttcatgcacacatgcatgtgtacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacaaagtgacaTGCACCAGCATTACAAAAGGATTCCCAGGATGTCAACATTTAGCATGACTTCTTCTATTTGATGAAGGAGTCACAAACAAGGCTCAGGTTCTAGTGTTAGCGTTGTGACAATCAAATATAATACTTTGAATCCAGTTTATAGATagatgattttgtttttaaggaATACATTTTGTAGTTGGTTCCTAGCACTTTTGGATTTAGTGACAATGAGACGAATTACGTCTAGAAAcacaattttattttgttttatgtgttatgTACACCTGGCTTTTGTGGGAGGAACAAAGATTTTGCTGTAAAAAGACTTATTTTTTTGGTAAAACGTTGTACACAGGAGCTGACTTACACCCACTGCTGGGCTTATCAAAGGAGATGGTTAATAAGGAGTCCATGAAAACAACTTAAGGATAATCTGCCTTGATGGTGGTTTTGCGTGTTTAAGTGCTTTAACTATGAATCGTCTACCTTTTTCTTTACTTGCCCCCAGTGATGTATGAATGGGATCTACTGGTTTCTATGCAATTTAGACTTGTACTAAATCAACTTTAATGAGACTTGAAACTGAATCaattgaagtaaaaaaaaaaaaagttgggtcAAATTTACATAATTGTTGCCAGATAATACGTTTGCAACCAGGGTCTGTTTTGAAAACACTCATTATTCCGGCATTCAACAACTCTGACATCTATTGGCAGCTGcagaatttttttaatgtttttaatgtgtgacACAACCAAATTCACATTATCTTTTCCACAACAGCTTTGCTTACTCAAAGTGTGTCCTGAATTGGATTTTCCAAGAGCATAGTGTACAATGCAATGCTTTTGTCAGAACACCAAGGATgacagtttaaaaaagaaaaaagaaaaaaaggtttctCCTTGGAAATGAAGAAtccttttgaaaaaatgtgtagTTAATGGACCAAAACATGTAAAACTATTGGCCAAAGTATAAGTATATTCACTACATCTGTTTATTAAACTAGAAACTGATAACACATGAAGGCATACATAGTAAGGGCGGGGCACAGGAAGTAGGGAAACCCTACCACCACATGTGGTTCAAGCATGTGCTCCTTGGCTCTCACCTCCTTGTGGCAGAAATAAAAGATCACACTAGAATTGCCCTTTAAATTGCAGAACCTAAGATGAACTTGGACCTAAGAAAGATGGTCTGCGCCGGTTAAATGACGATGTTAATTATCAGTTGAAGGTTTGTTGGACAAGGGAGAAGTGTTTGTTTGAATTGAAGGAAAATATTGTTGACAGTTTTGATGTTCTTGCAATGCGCACAATCATTTTATCATTTTAAGTAATGCAAGTCCTGTTGAACATACAAATAATTGATTGATTTATGTAATTTTATATCAAAGCTAATGTTGTACAGTTTAGATTAGTGTTTAGGCAAAATCGGCATTTCAACTCGATACAGCCTATCTCACTGCAGATACGACACATTTCCTTTCAAATGAATATACACTTTTCGTGTTGTCTTTTGAGTCCGAAAACATCAGACATTGTCTTCACAATCAATATGTTTGCACAAATGCATTAAAAGCACCACATTTGATTCAATGTTAGAGTCTCAGTTCTGTGGAGCTACTGTTGTAGTTTCTAAATTGCACTACTGGGAGTAGTTCAGTTGAAGTTCAGCCTACCCAGACAGGTTTTTTAAGTCAACACGCACAACTGTACATGGTGTCACTGTTATGactttgtctttttctcttaGTGTGTGTTCATTTCAATAAATGTATGATCATTCGTATTTATTGTAAGAGGCAAAAGTGTATAATTTAAAAACTAGTTTTGAAGGCTTTTCTGTTTCATTAAGGTAAATAAATATGGCTTATTTTCTTGCTATCTTTTTGATAATTGTTAAAAAGACTGTCATACTTGTCTCATGGAGGAGGTAGCTGCAAGGTAGCGAACACAGTGTACATATGCAGTGTCTTCCAATGTTTCTacgtgttttttttgcaaatgggACTTATGTATTAAAATACTTTTCTTTAAATGGAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0042221 response to chemical biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09094 AHRR, AHH; aryl hydrocarbon receptor repressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295764 lncRNA downstream 4856 8634100 ~ 8634685 (-) True G218522
TU295736 lncRNA downstream 43137 8547773 ~ 8596404 (-) True G218503
TU295737 lncRNA downstream 43137 8558205 ~ 8596404 (-) False G218503
TU295699 lncRNA downstream 105997 8522950 ~ 8533544 (-) True G218469
TU295708 lncRNA downstream 179831 8459498 ~ 8459710 (-) True G218477
TU295812 lncRNA upstream 24391 8737144 ~ 8739902 (-) True G218561
TU295814 lncRNA upstream 31094 8743847 ~ 8744309 (-) True G218563
TU295820 lncRNA upstream 36840 8749593 ~ 8750452 (-) True G218568
TU295823 lncRNA upstream 40758 8753511 ~ 8754861 (-) True G218571
TU295840 lncRNA upstream 77075 8789828 ~ 8791965 (-) True G218587
XM_039790138.1 mRNA downstream 141527 8476127 ~ 8498014 (-) False snx16
XM_039790141.1 mRNA downstream 141527 8476127 ~ 8498014 (-) True snx16
XM_039790140.1 mRNA downstream 141527 8477428 ~ 8498014 (-) False snx16
XM_039790142.1 mRNA downstream 141527 8484281 ~ 8498014 (-) False snx16
XM_039790139.1 mRNA downstream 141689 8476127 ~ 8497852 (-) False snx16
XM_039789687.1 mRNA upstream 11696 8724449 ~ 8734819 (-) True LOC120552044
XM_039790545.1 mRNA upstream 55467 8768220 ~ 8779822 (-) True ncf2
XM_039790552.1 mRNA upstream 85028 8797781 ~ 8851726 (-) True prkdc
XM_039789528.1 mRNA upstream 244656 8957409 ~ 8970638 (-) False LOC120551928
XM_039789526.1 mRNA upstream 244656 8957409 ~ 8970638 (-) True LOC120551928
TU295702 other downstream 208611 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 443662 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 1297646 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 1336774 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1409 other downstream 1338401 7301069 ~ 7301140 (-) True trnaw-cca_32
TU296313 other upstream 1864646 10577399 ~ 10669527 (-) True G218950
TU296891 other upstream 4476900 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 4975668 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 5112040 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 6333395 15046148 ~ 15048663 (-) False xkr9

Expression Profile