RNA id: XM_039789693.1


Basic Information

Item Value
RNA id XM_039789693.1
length 6403
RNA type mRNA
GC content 0.52
exon number 22
gene id tnk2a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21953645 ~ 21991347 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATTCCCCGATAAATAAGTGCCGGCTTACCGCCGGGCTGCAGCAGCGGAGAGCGACGGACTGAGCGAGGACTGACCGGAGGAAGGGGGACTGGTCTCCCGCAAAGCCCGTCTTCACAGACGTGGGGTCTCTCCAGCCATGGCCTCCTCCAGGTGACCTGCAGTGACCCCAGTCACTCCTGACTGCAGTTTTAAACTCCTGATCCATCAAAAGACTTCTGCAGGAGCCGCTGAATTATTTATCATCAGACAGTGGGCTCGGCTGCGGAGCCAGAAGGAGATGGAGAGCtagagagaaggaaagatggagagaaagggaagtaTGGAGGTGTCCGACGCTGCAGGAAAGCTGTGAGTCAGCGGGGAGAGAAAGACACGGTGGGAGGGAAGACGGAGAGAGTGTATAGATAGCTTTAGGTCATACGACTGGAGAGAGTGGCGTCAAACGCCTCTCGGTGTGTTTGtgaacgtgtgtgtgcatgcgcctATCGATTTGAGCAGAGAAGGTCATGGAGCCGAGAGGAGATTAGCAAACTAGACTCGGAGCACGGCGGCAGAGCTAACGCCTCCTCTGAATAGCAGCTagacaaaaaagagaaagagagagagagagagaggccaggCGAAGGACGAGAGGAGCTGCTACAGTATGGGGGAGAGCTATATGTATCGGCGACTCCCATACACcagaggagtggaggagggggaggatgaGGACGAAGAGGAGAGAGACGGAAGGAGCAGAGAGAGTGTCGACGGACAAATGatgcagTGTGAGGAGGGGACAGACTGGCTGCTGGAGTTGCTGACAGATGTGCAGCTGCAGCAGTACTTCCTGCGGCTCCGCGACGAGCTCAACGTCACGCGACTCTCCCACTTCGACTACGTCAAGAATGAAGACCTGGAGAAGATCGGCATGGGACGCCCGGGTCAGAGGAGGCTTTGGGAGGCAGTCAAAAGGAGAAGAGCCCTTTATAAACGCAAGTCCTGGATGagcaagGTGTTTCCAGTTAAACGACCCGACGGCGACCCCCAGCAGCCCTTACCTCAGGGGGCGTCATCCGTGGCGGGACCGGCCTATAGCGAGTCGGGGGCCTCGCTCACCTGCCTGATCAGAGAGTCGGAGCTGCAGCTGTTTGAGCGGCTGGGAGATGGCACATTCGGGGTGGTGCGGAGAGGAGAGTGGACCGGACCCAACGGCAGAATGTTGTCAGTGGCAGTGAAGTGTCTGAAGGCCGGTGTGTTGGACTCCGACGGTCTGGACGATTTCATCAGAGAGGTGAACGCCATGCACTCACTGAGCCACGTCAACCTCATCCGGCTGTACGGCATCGTCCTCACGCAGCCCATGAAGATGgtggTTGAGCTGGCCCCTCTGGGTTCCCTGTTGGATCGTCTGAGAAAGCGTCAGGGTCACATCCTCATCTCCTCTCTGTGTAACTACGCTGTGCAGGTGGCGTGCGGCATGGCCTACCTGGAGCAGAGACGTTTCCTCCACAGGGACCTGGCGGCCCGCAACGTCCTGCTGTCCACCAACGAAACGGTGAAGATCGGAGACTTTGGCCTGATGAGAGCTCTGCCAACACACACCGACCAATACATCATGGAGGAGGGCCACAAAATCCCTTTCCCGTGGTGTGCTCCAGAGTCGCTGAAGTCTCGTACTTTCTCTCACGCGTCTGATACCTGGATGTTTGGGGTCACTCTGTGGGAGATGTTCAGCCATGGACAGGAGCCGTGGCTGGGCCTTAATGGGAGCCAGATCCTCCACAAGGTGGACGTGGACGCCGAAAGGCTGTGCAAACCAGACGATTGTCCTCAGGATATTTACAACGTCATGCTGCAGTGCTGGAGCCCCAAACCTGAGGACAGACCCACCTTCATCGCCCTCCGAGACTTCCTGCTCGAGACCATGCCGACGGATATGAAAGCGCTGCAGGACTATGAGGAAGAAGACAAACTCCAGattaaaatgaatgatgtcATGACCATCATCGAGGGAAGggCGGAGCACTACTGGTGGCGAGGTCAGAACAAGGGGACGCTGCGTGTCGGCCAGTTTCCACGCCACGTGGTGACGTCAGTCGCCGGTCTGTCCGCCCACGACATCAGCCGGCCGCTCAAACACTCCTTCATCCACACTGGACACGGAGACACAGACCCTGACAGGAGCTGGGGACACGCTGATCGCATAGACAGTCTGTATTTGGGGAACCCCATGGACCCTCCTGATATCCTTGGGATGGAGTCGGGCACCGCAAGGCCGACCAAACTCCCCAACCGTTCTAAAAAGCAACCTCCTCCTCGGCCGCCCCAACCTGCCGTTCTGCTGAAGAAGCCGTTCTACGACAGCGTGATGGACGACTACGACGAAGAAGACGCCGCCAGCGCGTCATCTGGGCTGAAGAGGCTGGGAGCGTCCCTGGGGCTGAAGCTCCGACCGTGGGAGGGGTCCGGTGTGCGCTCGGCCAAAAGCGAGGTGTCGCTTATCGACTTCACTGACGACAGCTTCAGCTCGACCACGCCATCTCCGCTCAATGAGGCGTGGCAGCCGGATGAGGACACACTGAAGGTGCTGATAGAGATTGAAAGTAGTTGGATCTTCTCCAATGTCCATCATTGTCATCCCCAGGACACTCCGTCCATCCTGGACTGGCCTCTCCCTCAGCCAGCTTACGACGAGGTTACTGCGGAGCTCGAGGACCAATCCGAGGACCACGAGGTGCGGTCTATCAACAGGGGATTTACTGAGGAGACCGCCGCCTCGCCCAGCGCCGCCATGGCGGGCAGGAGCGAGTCTCAGTCCGCTGACATCTTCCAAGAACTGCAGAGAGAGGTGATGGTGAAGCTGCAGGTTCCCATGGCGACGGGCcgctccctcccctcctcccccctccctatGCCCCTGGCTCCGTTGGGTCCTCATCGACAGATCTGCctgcctcctccctcccccaccTCCAGCTCCTCCTTCGCCTGCTGCTTTGAGGACCGGCCGGTGTTGCCCCCCCGCAGCCCTGTCCCGCCGATGCGCCCCTCCAAGCACAACCCCCCCGGCCGCACCACCCACCCGCAGGCGCGCTCCAGCTCCATCTCCCTGGGCGACGAGGAAGACACGCCTCCTCAGATCCCACCCAGAGACCACGCCTTCTCCCAGCCGGGCTCCcgctcctcctctcccctcccacTGGTGCCGCCGCTATCCTCCTACCCTGTGgccctgcctcctcctcccctctccgtCTCCCCACGCCGGGCGTCCGGTCTCCTGGGTCCCCTTCTGTCTTCCAACTCCTCCTTGGCCCAAGCCACATCACATTCCTCCCGGCTCGCAGCTCGCGCTTCCTCCTACTCCTCCAGCTCCTTGCTGGATCCCCTCGCCTCTCGTGAGGGGCGTGGCCTATCCTCACTGATTGACAGCCCTCAGAGCTCTGCTCCCGCCCCGCTGCCGGAGCGACCAGCTTTTCTGGAAAGATACGGAGCAGCCAATATGGCGGCAGTCAAACCCATGATTCAACATCCTGGCGGAGCCAAACCAAACTCttcctacaacaacaacaacgggcGAAGTGCAGCTCCCAGCATGCAACAGGAGCAGAGCGTCACACAGGTCCAAGGAGCCGTACACGGAGTCACGCTGGAGGAGTGTCAGGCAGCTCTGCACACTCACAATTGGAGCATCCCTCAGGCCGTAAATCATTTGAAGGTGGAGCAGCTGTTTCGGCTGGGCCTGCGGTCGAGAGCAGAGTGTGAGGAGCTTCTGCAGCGCTGCCAGATGAACCTGGAACAGGCCAGCACGCTCATGCTGGACACATACGGACCACATCGAAACGAGAAGTGACAGCATGAGGACAAACTTGGTGAGGAAGCTGGGATGACTCACCGCTCCGAGCACTCCAGTGAACAGTGATGCTTTTTAATGAACGCAGGAACATAAAgcgatatacagtatgtgcctcACTGAATGTACTGTGAATTCCTGCTATTACACACATGCTCATTATTATCTAACAGAGCAGCTTGTTGAATGAGTCACATTTACTTGAACAGTtgctatttatgtttttattactaCCTGAATAATGACAAGTTATGTTTCAGCTGGTAGCTACTGCAAACCTTtactgcgtgtgtgtctgctgtgaatgtgtgcatgttCAGCTGTTTGTTCACGCATAAGCTTACATTTAGGGCTGACCCGAATGCTTTGAAGCTTCGAAGCTTGAGTCGTCGCCGTGGTAATAAACATCCAAATCAGTTTTCGAATGCTTcggtttgttcttttttttatttatttttgatatatgCATTACCCCAACAATCCAGAATAGCCCATGAAATAAGGAAACATAATCCTACGTAATTCATTTGTGCATCAACATGAATTATAATTTGTTTTTCTCAGCAGAGTGCTGTTTGTTATGGTGTGTAGGTTGAGGTGCGGCGCTGTCCCAGGTACTGAAAttgatagacagacagacgtgAAAACATCACGTCGCGGCCTGCCTCACTTCATACTGGCGCCTGGCCTGAGCTATCATCTAACCACCCGCGCCAAAACTAAATATTGGACCAAAATTTGCGATGATGACAACCAAAAAGTAGAGTGACAGATATACCAGAGAAAACTGGCATATCACGAATCTACAGCAAGTTTGGCAAGTACCTGAAAACTGTAAGTAACAGCTTAGCCTTGATAAAGTATGACTGCCAGGCCTTTTAAatcatatgtgtatatgtgtgtatgtataatttatttgatgtgattatccaaatgtctctgctgtctgtcaACAGCAGCAGAGTGCACAGCGTCTGGCTAggctgactgacagacagataGCAGTTAACTAAACTTAAGTTAAAGTTAGTGTTGTAGCCAATTTTGCTGCGTGCGTGtatagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtaggttTGTGTGAATGGTTTGTTCGCTATGTCACCTGCgcacctgtgtgtatgtgtgctaatCAGAGGTTAGAAAGGGAAGTTGAGGGGGATGGAGGAATTAGGATCTGGGAAGCCACACAATTTCTCAACCTCAGCCGTGTGCGAGTGATGTTTTTAGATCTCGTCTGCTCGTCTCCAATCTTTCACAGTCAGCCTTTTTGTaggtgtttttaaatgtattcataaaatAAAGGATTAACCTTAAGACGATGGCGGACCTCATTATTTGCACCAGCAAGCATGGAAATGGTTTCGAATTCCCTCCAGTGGCATTTTTTGTGGTCAGATTGCCACTACAGCTACTAAACTAAATCCTCGCTCACCTGCCGGCGAAAGTCTGTAGACTGATTGATGGTCCCCCATTTCCAATCTTCCATCTACCCGTCTACCCCCTTGTATTCAAATACTTACCACCGAAGCTCCAAAGCCCAAAAAGTAATATTCGGGACAGCCCTATTTACATTTAAGTAAATGCACATGCCTTTCTGCTGTTAATGAAGCGATATAAAATCAGGGAAATGTCAGCTAGCTATATAGTTGtatgtttttatgaaaatgtaccGATAAGATGCTGTATTGTTTATAGCACTTTACTGAGTGTTTCAACACACGAGTGGATATTTTTGAGGACACAATAACTGCTGGTCAGAATAAGATTAATCTATTTAGTGAAGTGAATATGGACTGATAGCATATCAGGTGTTATTAATGTATCATTTGTGTTGTAAACAAAGCTTTTTAGGCTTTATAAAGGCGTGATTTTTAGATGTTATTGTAGGCAAATAAGATGCCAAAACAGAAATGTGAAGATATCTACCATCTCCTAATGAACACAGGGTAGCCTACGGagttgaacgtccacatgttagATATTTAATTAACTAAGTATTTCTTCCTATAAAAATGACTGCTGCATGATAATCACAAACACATGCTGAAGTGCTGACCTGAGTAAGTAGGCAACTgctatgtgtgagtgtgtgcatgtgtgcatagtGCTGCACGTTGTGATGACAGCCAACttcacagtatgtgtgtgtctgtgcagatattgatcataaatgtgatcacTTGCTAGTTATAAGCAGCTTAACAAAGACGGAAGGATTGGATTTCTCATTATTGCAGCTACTTTGCATGTAAGAGACAAGTTGCTCTCTTCTTCAAGATACAATTAAGACAGTACAATTAGATAAATTGCTAacgctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagacatcGTTCCCTCGTATGCTCTGCTGTAAGCTCTTGTAGTCGCTCTGCTGTATGTGATGCAGAATGCATTAATCTGTAACATTTAAGCAGCTTGAAACTTGAAAAGTGCATATATGGCCTCCAAGTTTTGTATTAAAGTGAAATGTGAGTTATTCTCTTTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300069 lncRNA downstream 8955 21944370 ~ 21944690 (-) True G221768
TU299991 lncRNA downstream 120761 21832156 ~ 21832884 (-) True G221712
TU299984 lncRNA downstream 137922 21814496 ~ 21815723 (-) True G221708
TU299960 lncRNA downstream 222158 21731287 ~ 21731487 (-) True G221695
TU299875 lncRNA downstream 535638 21415951 ~ 21418007 (-) True G221616
TU300100 lncRNA upstream 102739 22091541 ~ 22091753 (-) True G221793
TU300130 lncRNA upstream 125580 22114382 ~ 22120446 (-) False LOC120552473
TU300148 lncRNA upstream 235087 22223889 ~ 22246053 (-) False G221832
TU300146 lncRNA upstream 248012 22236814 ~ 22246053 (-) True G221832
TU300147 lncRNA upstream 248012 22236814 ~ 22246053 (-) False G221832
XM_039790878.1 mRNA downstream 35990 21876164 ~ 21917655 (-) True tmtopsb
XM_039790877.1 mRNA downstream 37605 21876164 ~ 21916040 (-) False tmtopsb
XM_039790164.1 mRNA downstream 234140 21716547 ~ 21719505 (-) True LOC120552274
XM_039790163.1 mRNA downstream 242029 21706905 ~ 21711616 (-) True LOC120552272
XM_039789697.1 mRNA upstream 3487 21992289 ~ 22009088 (-) False tfr1b
XM_039789698.1 mRNA upstream 5742 21994544 ~ 22011086 (-) False tfr1b
XM_039790569.1 mRNA upstream 126283 22115085 ~ 22120611 (-) True LOC120552473
XM_039789531.1 mRNA upstream 206434 22195236 ~ 22200046 (-) True LOC120551932
XM_039790526.1 mRNA upstream 213965 22202767 ~ 22218381 (-) False smpx
TU299660 other downstream 1090980 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2626751 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 3004164 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 3322170 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 1215 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 213981 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 213981 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 2974643 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3067791 25056593 ~ 25086708 (-) False LOC120552232