RNA id: XR_005637957.1


Basic Information

Item Value
RNA id XR_005637957.1
length 4520
RNA type transcript
GC content 0.46
exon number 19
gene id tfr1b
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21990017 ~ 22011086 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGATCGAGTGAGGTCTGCATTCAACAGCATGATAAAAAGTGAGCGGTACAGCAGGTTCACTCTGCAGCCGGCAGAGGACGGAGAAAGACATGTTGAGGTCAAACTGTCGGATGGCGCCACAGAGGCCGAGGAGCAGGCCGGGGGATCTCCGAGCTTCAGGCCAGCACCCCCACATCAGAAACGGAGTACTATTTGCTACATGGCCCTGGGGATTCTGCTGATATTTGTCACCGGCTACATGCTTGGTTACCTCTGTCACCGTGAAACTCAGGTGGAGTCGGTGAACTGTGGCACCGAGCCGGAAGGAACGACCGCTACGCCACCTGTTGTTACGCCACCTGTTGTTGTACCAGCTCCAGACGTTCCTCTGAACCAACTCCTCGCACAGAAACTCACCAGCCGCGCATTTGACGAAACTCTGAGGGCCTTTGACCTGTCCAGTCGCTCAGCAGGAAGTGAGGAAGACCGGAGTCAGGCAAACCGCATCTTTGACCAATTCAAGAAAGCAGAGATGGAGCCCTGGACTGACATCCACTACGTTCAGCTGCAGACACCAGACAGCAAGCGTCCAAACCGTGTCCGTTTTGGTTCAGATGTCTTCGAGCCTACAGGGTATTTGGCTTACAGTGCTCCTGGGGATGTTGAGGGCAAGCTGGTGTATGGCAACTATGGTCGTCAGGAGGATCTGGATGTTCTGCAGAAGAAGAACATTGAGCTGAAAGACAGTGTGTTGCTGCTCCGAGCTGGAAAGATCAGCTTTGCAGAGCAGgTTGATAATGCTGCCACAAAGGGGGCCTCTGCTGTTCTAATCTACCCTGACGCTCAAGATTACACATATGTAGCGGACACGGCACTCTACGGACATGTGCATTTGGGTTCAGGCGACCCCTACACCCCTGGGTTCCCCTCCTTCAACCACACCCAGTTTCCCCCAACGCAGTCCTCCGGCCTCCCTAAAATCCCAGCCCAGACTATTACCGCCAACATGGCTTCAGCTCTCCTAAaGAAAATTGGCGGCCCTGAACCAGATGCAAGCAGCGGTTTTAAAGGCGGCCTCCCGTCAGTGGCTTACAGCCTGGGAGGCAGCAAGAACATCACTGTTGAGGTGAACAACGTGCAGGTCAACACAGAGATCCACAATGTGTTTGGAGTCATAAAAGGATTCACTGATCctgATCGCTACGTTGTGCTGGGAGCTCAGAGAGACGCCTGGGGTGAAGGTTTTGCCAAAGCCGCTGTTGGCACCTCAATACTGATAGAGCTGGCCAAGGCTGTTCACGAGATGGTGGAGAACGATGGGTTCAGACCCAGGAGAAGCCTGGTGTTTGCGAGCTGGAGCGCCGGAGAGTACGGAAGTGTTGGCGCCACCGAGTGGTTGGAGggTTATATGTCTTCTATTGACAAACGTGTTTTCACCTACATAAGCCTAGATGGAGTGGTCATGGGTCGTGGGAGCTTTATGGCCTCAGCAAGCCCGCTGCTCCACAGCCTCCTCGAGACCACGATGAGAGAGGTGAAGAGCCCTCTTGGTTCTGGCACTGTGTACGATATGGTGGGAACAAGTAACTGGGAGGCCAAAACACTGAGGCCAATGTCAATGGACGACCCCGCCTATCCGTTCCTGGCCTTTTCTGGAAttccctccatctctttccACTTCATCTCTCCCAATACTGAGGCCTACAGTTACTATGGCACCAACCTGGACAACATGGATCACCTCAATTACGCAACCGGCCATCACACCAGTGAAATGGTGGCAGTGGCGGCACAGTTCGCCGGCCAGATGGCCCTGCGACTGGTCCACGACCACCTGCTCAGCCTGGATGTTGGCCGATACAGCAGCGTCCTCACCAAGGCTGTGGTCCGAGTCTACAAACGCGTCAACCAGCTCTCACAGTCTGGCCAGCTGAAGGGGGTGAACCCCAACTGGCTGAATCGTGCACGCGGCTCCTTCCAACGAGCTGCTGCGAGCATCAAGACTGACATCCAAAACACTGACTTAAATGACCAGGAGGCCTGTCGGATCCTCAACGACAGGATCATGAGTGTTGAGCACAGCCTTCTCTCTCCATACGTGTCCCCCACTGAGACTCCCTTCCGTCACCTCCTGCTGGGTCGGGGCTCCCACACTTTGGCATCCATCGCCGAGACCGCCGACATGGAGCAGCTCCACATCCAGCTGGCCCTGGCCACCTGGAACCTGCAGGGGTGTGCCAACGCCATGGAGGGAAACCTCTGGGACATCGATGAGGAAATCTAAAGGAAGACGGGGGAGTTGTAAGCGTGGGTATCGTGTGTGTTGTTTAAAATGAAGTTTGAGGTAGGGCAGAGGGAGAAGCTCCAATATCGGCACTTAAGCACAAGCTGTCAATCACAGGTCTAAGCCCCACCCTTTACAAAACAGGCTTGTACTTCCACAAAGATCCAGGAGGAGATGGAAATAGAAACATATTCTTAACTGTGAACCAACATCAAATACTTGAAGAAATATTAATACTACTGACAGAtctgcctcctctcctcctggCTCTACATGGAACCAGTCAAAGCCTGTGCTCTGTCCTCTCGCCTTCGAAACAATGAGAAAccttatttatactttttttatttatcagtggCAGTGCCCACTATAaagttattgtttgtctttttatACGACGTTATCGGAAGCAGTGCCTTCCATAATTATGACGGTTATACTGTCTAATCCTCCGGCAGCATCTGCTACAGAAATGACTCCTCAACTGTTGCTGACAAAATGGAGCCCGTGAGaaagttagatttttttttattttaatttttttttatggccTTCATTTCTTCCATTTTATGTGAAGCGATTTCTAAAGGGACATCATCAAATCATGAGAAAGTGGCGTGCATTAGCGGTGCTTCACTCGGTCATCAAAATGgttattaattaaaatgcattaaaagGGAGAAATGAAGGGCAGAAAAAAGTTGTTCCAGTCTGTCATAAACAAGTCTAGGAGCAGAGAAAAAACTAACTCTCTGGATATTGGGAAATTCTTATTTATATAGCAACAAGCCCAGAAAGTTAAGACTGGATTTATTCCCTGCTTGGtgacagaataaaaaaataaataaataatgcacaAAAATGATCAAATCACCCTTTTTAGCGCGACAGCTAAACTGATTGGTTCCATAATTTGCAAGAAAGCCATTTATGTTGCACAGTTCGAACTTATGGAGCAGTTTATAATATAAAGTTATCGGGAGCAGTGTCTTCCATAACTAAAACCCATTATCGGAAGCAGTGTCTTCCATAATGACAAGCAGTGATGGTAGTTTTTGcctaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgatttgcgtttgtgtgtttttacatgTGTATTTATCGGGAGCAGTGTCTCTCATATTTCACTGAAGGGTGGAACGACTTATCGGGAACAGTGTTTCCCAGAGTTTTATacatatttgttttgtcttcttttattttattatctgtGTGCACTTCTCCATTTTTGCTCACTTTTGTGTACCAGGCTATGATTTTCCtgcagcattttattttattttttttcgatTTACCGATTTTTCCATCTAATCAAGCAACtccatacaaacacacacggaagaatattaaaatgaattctATTCAGTTAGAAACAAACTTCTCTGTAGATTCTGTAGGCATTCTTACCTCCAATCCtctttgttttctctgtgtTAGTGACTTTAAAGACACAATAGATGTTGCACCTACATATAAATTCAATTCACAAGCTATAACTCTCTTTGCATGCGTTTCAATGACCTATTTCCTCTTCAATGCATGGTACTGTATTGCTTTTGATAAGGTGTAGCTCAACAGACTTGGACCATATTACGAACTTTTCAAATAAGTTAGGTTTAGATACTAaactatatttttgtttaatcatTTTTCTTCTTATACAAGTAAAATCAGTGGTTTTCCTAGAATATTGGCAGGCCTTAGCATTAGGAGGAACATAAAACGGCAGTAAAAATATGAGACCATAGATAAATATTCAACAAAGGTAACTGTAATTGCAACTTATTGAACCTGTATACAATTGTAAGTACAGAAAGGTAAACTTGTTTAAAGAACATTATTAGTCAGTTAGCCCTATTTAACCAGTGTAACTACATTTAAAATCCACTTTGTTTTAACATACCCTCAAGAGCAAACAGAACGTTACCATTTCATAATTTAGGTTATTACGTGTTTGgatacttttgtttgttttctggtgTCACTTCTGTTGAGCTTGCTATTGTTATGGCCTGTTTTGACTTTCCTAGATTTGTTAACAAGAGTTTAAAATAAGGTTACTTTATCCCGAGGGGGGCAAGTTGGGTGGTTGGGAAATGGCTTTTCCGCCCACTGTGTGTACTGCAGTGTTTCAAAACCTGTTCATGAAATCATGTTTTTGTGATCTCAATGTTTAGCAGAAAAGTGTAATAAACCCTTTTGGCTTAGCATCCAGTAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300069 lncRNA downstream 45327 21944370 ~ 21944690 (-) True G221768
TU299991 lncRNA downstream 157133 21832156 ~ 21832884 (-) True G221712
TU299984 lncRNA downstream 174294 21814496 ~ 21815723 (-) True G221708
TU299960 lncRNA downstream 258530 21731287 ~ 21731487 (-) True G221695
TU299875 lncRNA downstream 572010 21415951 ~ 21418007 (-) True G221616
TU300100 lncRNA upstream 82453 22091541 ~ 22091753 (-) True G221793
TU300130 lncRNA upstream 105294 22114382 ~ 22120446 (-) False LOC120552473
TU300148 lncRNA upstream 214801 22223889 ~ 22246053 (-) False G221832
TU300146 lncRNA upstream 227726 22236814 ~ 22246053 (-) True G221832
TU300147 lncRNA upstream 227726 22236814 ~ 22246053 (-) False G221832
XM_039789696.1 mRNA downstream 1215 21953645 ~ 21988802 (-) False tnk2a
XM_039789695.1 mRNA downstream 1215 21953645 ~ 21988802 (-) False tnk2a
XM_039789693.1 mRNA downstream 1215 21953645 ~ 21988802 (-) False tnk2a
XM_039790878.1 mRNA downstream 72362 21876164 ~ 21917655 (-) True tmtopsb
XM_039790877.1 mRNA downstream 73977 21876164 ~ 21916040 (-) False tmtopsb
XM_039790569.1 mRNA upstream 105997 22115085 ~ 22120611 (-) True LOC120552473
XM_039789531.1 mRNA upstream 186148 22195236 ~ 22200046 (-) True LOC120551932
XM_039790526.1 mRNA upstream 193679 22202767 ~ 22218381 (-) False smpx
XM_039790527.1 mRNA upstream 193679 22202767 ~ 22217459 (-) False smpx
XM_039789868.1 mRNA upstream 670603 22679691 ~ 22688402 (-) True LOC120552124
TU299660 other downstream 1127352 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2663123 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 3040536 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 3358542 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 3365219 18624726 ~ 18624798 (-) True trnar-ccg_3
TU300141 other upstream 193695 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 193695 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 2954357 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3047505 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 3547385 25556473 ~ 25562540 (-) True LOC120552299

Expression Profile