RNA id: XM_039789742.1


Basic Information

Item Value
RNA id XM_039789742.1
length 2615
RNA type mRNA
GC content 0.51
exon number 6
gene id plppr5b
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4618639 ~ 4756817 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagagtgtgTAACGGTAGTCGCCGCAGCAGCGAGCAGAGTAAGCCAGGGCGAGCGAGCGAGCCTCCACCACAGTCAGCGAGCGGCTGAACGCGCGCAGCCGAGCCGTCATGTGCCGGGCAGCGGGAGTCGGCGCCGCCGGGGAGGCTGGGTAGgagcgagagagggagagtgggagagagaaaaggctTTGTTCTAATTAaatgtctctcgctctctgtctgcATCATGCTGTACTTCCAGCTGGTGATCATGGCCGGGACCGTCATGCTGGCCTACTACTTTGAGTACACCGACACCTTCAGCGTGCACGTGCAGGGCTTCTTCTGCTACGACACCACGTACACCAAGCCCTACCTGGGGCCGGAGGACAGCAGCGCCGTCCCGCCCGTCCTGCTGTACGCCCTGGTGGCCGGGCTGCCCACGCTGCTGATCACAATAACGGAGACGGTGCTGTTCCTGGTCCAGTACACGTCCAAAGAGTTCGACCGCTCAGAGAAGACGGTAGCCACCGGGGACTGCTGTTACCTCAACCCGCTGGTGCGCAGGACCTTCCGCTTCCTCGGAGTCTACACCTTTGGCCTCTTCACCGTTGACATCTTTGTTAATGCAGGCCAGGTAGTGACAGGGAACCTGGCCCCCTACTTCCTGACGGTGTGTAAGCCCAACTACACGGCGCTGGGCTGCCAGCAGGCCCTGCGCTACATCAGCCACCAGGAGGCCTGCACGGGAAACCAGGACGACATCCTGCGCGCCCGCAAGACCTTCCCATCCAAGGAAGCTGCACTCAGTGTCTACGCTGCACTCTACCTGGCTATGTATGTGACGTGCACGGTGCAGGCCAAAGGCACGCGTCTGGCCAAGCCCATGCTGTCTCTGGGGCTCATGTGTCTGGCCTTCCTCACCGGTCTGAACCGCGTGGCTGAATACCGCAACCACTGGTCGGACGTCATCGCTGGCTTCATCATCGGCACGGCCATCGCCACTTTTCTGgtGGTGTGTGTAGTGCATAACTTCAAAGGAAAGTTACTGCTGTGCGAGGAGTCACCAGCGGAGCAGCGGCCGAACACAGGCATGCTGAACATCGGCCGAATGGAGAGTCCTCTGGAGAAGTACATCGCCTCACAGAATCACATCGCCTTCGCTGAGGTCACATGACGTGGAGTCGGCCGTGTGGCAGACGCATTGGACGTCCACGCTCTTCACCGTCCAATCCAATTAACCGGAGTGCAGTGCTAAACccattctctgtgtgtgtctggtctGCGGTATGTTGTTCTATGTTGTCTTTTATCAGGCCCGTTGTCATTTGCAGCTTCTTGTAttcaaggaagaaaaaaaataacgaaAGAGGAGTCAGTAACTCAGTGGGACAGGTTGCTTCTGCTTTCTCCATCTATGCACTTATTCTGAATCCTTTTGAATCTCGCCACCAAAATGACTGTTGCGAGGCGGACAGGTTGTACACTGTGGGACAGAAGAACAAGAGAAGAACTGGATTGCACCATCTCAACTCTGCCAAGGTCCAATATGTTCTCCTGGTGTGgttatgttgtgtaaaacagagTGTTCCAATCAGATGGCTGTAAGTCGTTAAGTTGAGTGAGAGTGTCCAAACGGAGAAAGATGAAGAACCCTCTCTTGTTATGTCGCtaaagttttgtttttgctgtcatCACATCACCTTTATAACGTTCAGAGGGCCGTTGTGAATATCAGAATATGACATTAACTGCTGGGCCCATATTTATCAAACCAAATGGGACATTTTCActtaaaggagcagtgtgtTTAACTTGCATGGCAGTTGGATTCTCGCAATATGACGCGAGAGTTGCGATTTAGTTGGGCAATTTTTATTTGTTAGATCTTTTGACAGTTGAGATATGGCAGGAAATGTGGGGAGAGAGATTTGCTGCTGGTTTGATGTCTTGTCTTACCTTGCACAGCAGCTGAATGCTCATGATATCACGAGATCATGCGAGAAGCTACCGGCAGCTACagcgtggtttaggtgtgtttGACGTCCGCGGCAACAATGGCAGACGTGAcggacagatggttcatccaatcacctgccaggtattttttgaaAGCGCcttgcccttttccaaacagtttccaatgacggcttctcacGTGGTtctgtgttaaaaaaacaacaacatctgGCTCATCAGGTTACATGACACCTGCCAGCCTCTTGCAATAAAAAGCACTAAAGGTAAAGAACGTCAGTTTGGCAGAGTGTAGGATTCAGGGGGGTATTGGCAGAAATGGAATATAATCATATTTATGTTTTCATAAGCATGAAAATCACCTGAAACTAAGAATTGTTGGGTTTATGTTTAGCTTAGAATAGAATTCATTTCTACATAGGGAGCCGGTCCTCTTCCATGGAGCCTGCCATGTtttctacagtagcccagaaTGGACACCATGGGTTCTCTGCATGCTTACAAAGGGACGGGTGAGGGGAATGGTATTCAGTTGCAATCTGTGACCTCACCACTAGATgccactaaatcctacacactgctcctttaaaggaaagataaaactgaaaaaaaagtcttttgaCTTTAAATactcggttacactttacttgaaggtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295021 lncRNA upstream 10101 4655265 ~ 4655474 (+) True G217969
TU295007 lncRNA upstream 141679 4523594 ~ 4523896 (+) True G217956
TU294993 lncRNA upstream 142869 4522385 ~ 4522706 (+) False trdmt1
TU294974 lncRNA upstream 228840 4436423 ~ 4436735 (+) True G217927
TU294972 lncRNA upstream 262206 4403049 ~ 4403369 (+) True G217925
TU295015 lncRNA downstream 2803 4759620 ~ 4762250 (+) True G217964
TU295016 lncRNA downstream 2803 4759620 ~ 4761661 (+) False G217964
TU295068 lncRNA downstream 199256 4956073 ~ 4956401 (+) True G218012
TU295081 lncRNA downstream 445770 5202587 ~ 5202896 (+) True G218023
TU295083 lncRNA downstream 476973 5233790 ~ 5234090 (+) True G218025
XM_039789738.1 mRNA upstream 143126 4511713 ~ 4522449 (+) True trdmt1
XM_039789752.1 mRNA upstream 342451 4313351 ~ 4323124 (+) True LOC120552080
XM_039789754.1 mRNA upstream 404001 4256048 ~ 4261574 (+) True ppp1r17
XM_039789732.1 mRNA upstream 415269 4221909 ~ 4250306 (+) True LOC120552069
XM_039790687.1 mRNA upstream 730449 3900951 ~ 3935126 (+) True LOC120552545
XM_039789543.1 mRNA downstream 124471 4881288 ~ 4888711 (+) True LOC120551947
XM_039790919.1 mRNA downstream 778830 5535647 ~ 5555611 (+) True LOC120552695
XM_039790206.1 mRNA downstream 994064 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 1097823 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 1153060 5909877 ~ 5928609 (+) True lancl2
unassigned_transcript_1360 other upstream 246402 4419092 ~ 4419173 (+) True trnas-gcu_27
unassigned_transcript_1359 other upstream 250572 4414922 ~ 4415003 (+) True trnas-gcu_26
unassigned_transcript_1358 other upstream 252944 4412550 ~ 4412631 (+) True trnas-gcu_25
unassigned_transcript_1357 other upstream 254613 4410880 ~ 4410962 (+) True trnas-gcu_24
unassigned_transcript_1353 other upstream 271999 4393504 ~ 4393576 (+) True trnaa-cgc_15
unassigned_transcript_1366 other downstream 42358 4799175 ~ 4799247 (+) True trnaa-agc_24
unassigned_transcript_1369 other downstream 48414 4805231 ~ 4805303 (+) True trnaa-agc_25
unassigned_transcript_1371 other downstream 49823 4806640 ~ 4806712 (+) True trnaa-agc_26
unassigned_transcript_1372 other downstream 53107 4809924 ~ 4810007 (+) True trnas-gcu_36
unassigned_transcript_1373 other downstream 55734 4812551 ~ 4812632 (+) True trnas-gcu_37

Expression Profile