RNA id: XM_039789762.1


Basic Information

Item Value
RNA id XM_039789762.1
length 3491
RNA type mRNA
GC content 0.53
exon number 17
gene id si:ch73-173p19.1
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19658889 ~ 19666720 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTTGTTGATATTCAGTCAACGGGCTCGGTAGTGTTGCTAGCTGGAGGCGCTGCAGACCCAACCAGGAAGTCAACAAAGTTGCTAGTTAATATTAGCTTCACTTTGATTTTCATCCATTAATGTTATAACGACATCATGAGTTCCGCTGCCCCTCCGACTATTGGGGAGTTATTCCTCATCCTCAGTGAGATGGGGTTCTCAGAGGAACAGATCCAGGCAGCTGTCCAGGCGGGGCATTTTTCTGTGTCAGACGCGGCTGAGTGGCTCTTGCAGGGTCAGTATCCACGGCACAGGTTGGTCAAGCAGTCATCACAGCCAGCTGAGacagcattttctgctttcaacCCACCCAAAGAGGCAGCAAGCACTTcagagacacaaacatctcCTTCTGACAGCAGAGCGTCCCCTTCATTGGTCCTGAGACCATCACAGTCAGGCACCCTGTCCCCAGACCCACTACCAGTCGAGTCCCGCATCAAACAGGACAAGAGTGACTTTGAAGAGCAGCAGAGACAACGTGGTGCTCAGGAGGCCAaagcagagagaaaacaaaagaaacagGAGCGCGAGTTGGTGTTGAAGCGGATAGCTGAGGATCGGAGGAGCTTGCAGGAGAAGAACCAGACCAGTGCTGCCACAGAGATGTCTCCTTCTAGTGGTCAAGGACAGAAGCTTGGAGGAAAGATTCAGACTAATGTAGATAACAACTGCGTCCTCATGATTCGGCTCCCGTCCGGCGAGTCCATGCGTGAACGCTTCCCAGCTGATGCTCCTCTTCGCAGTGTCGTGGAGCACATCACCGGACGTCACCCCTCCCTagcctccttttctctcctccagGGTTTTCCACGGAAACGCTTTGGGGAGGCAGAACTCGCTTGTTCACTGCACTCTCTTGGCCTCACACCCAACGCTGCACTGTGTATTCAGACCACTCCTCCAGAGACGCCTCAGGATCCTCCGAGTCCTGCAGATCCACCATCAGCGGTACAGAATGAGCCGTCTCCTTGTGATGTGGCTCCTCAGCCACATATCCCTGTCCAGGAGGGGGTGGGAGGACAGGACCTTGTTCTACCTCCTCCACTACCCAACCAGCTGTGGGAAGAGGCTGTGAATTACGCAGGGATACCTGGAGTTGGTCCTTCCCTGTCCGGGCCATCTCACTTCTGGGGCCGAGGCCAGAGGTTGGTTCCTGGTCAGGCCGAGGAAGCTGCTGGCATAGAGGTTGATGAGGAAcaaggagaagaggaagaaccACCTTACATGCTTAACGGAATGCCACGGCTGCCTTTCTTTCCAGAGAATAGATTTCGTGGAGAATTTGAGCGCAGGCACCACTGGCCAGAGCAAGGCAATCGACTCAGGGAGGCTCCAGAAGACAACCCGGCAGAGCCTGAGGATGCGGGAGGTCAGGAGGCACCTGGAGCTGCAGGTCTGGCTGCAGTGGAGCGCCTTCAAAGAGCTGCGCAGCAAGAAGACCCCCCTGCCTCCCAGGGACAACCATCACCCCCTAAAAAACCCTTCAGGGCACCCAGCGTGTCGTCCCTATGTGCCTTGGCAACCCGCGCAACTGTCCACCTCATGACTGctCCCAGCATGCAGTACATCAGCAGTCTGGCATGCCTCACCCCGGAGCTAGCAGAGCTTCTGCTGAACCACATGTCCCGTGAAAGGCTCCTACGTCCACGCACCCTGGAGCTCTTCTTCGGCTGCCCATTGCAGAAGTTTGTTCTAAACTGCTACCCTTACTCCACCAACGAGCTCCTGCGGCAGTTACGGGCCTTCACAGCACTGAAGCATCTGAGTCTGGTCAACTCGCCTCTCATCACTGACACTGGGCTGTCAATCCTGTCCAGCCTGGTCAAACTCCAGTACCTGAACCTGGCCTCCTGTAGCAAACTGACTGACTCCTGTCTGCAGCATATCACAGGTTTGAAGAGCCTGTGTTTCCTGTCCCTGGACCACACCAAAGTGACGGATGCTGGGATGGTTCTATATCTCCAGTCAGCTCCGTGCTGTCTCTCTCAGCTCAGCCTGAACCAGACGGCTGTGACTGAAGCCACACTTTTAGTCCTGCCCACCTGTGTGCCACAATTGCGGCTCCTCAGTATCAAGCAGACTAAGGTCAGGGATGTGTCGGCTTTGGCAGAGCTGTCCAGCCTGCAGACTCTTAACCTGGATGGGACAGGTGTGACTGAAAGCTCTCTAGAGCACCTGGCCACCCATCCTGCCCTGACTTCCCTGAGTTTGGCGGGAATCCCCGAAGCGGATGGTAACCACGCCCTGCAGATCATCTCAGGTCTAAAGTTGACTCACCTGACCCTCCCTGGACGCCACTCAGTGACAGACAGCGGGTTGTCATTCCTCTCTAGACTGTCTCAGCTCTTAGAGCTGGACCTGACTGACTACACGCACGTCACAGACCAGGGAGTCAGCCAGCTCTCCATCATGACCAGGTTGAAGAAGCTGTCACTTAGCAACACACAGGTGACAGATGCAGGGCTCCCCTCCCTGCGTGGCCTGCAGGACCTGCAGGAGCTCTGTTTGGACCGAACAGCAGTGACCAGCCGAGGAGTGGCCGAACTCATCAGCTGTCTGCCGCACCTCCAGGTGTTGGGGTTAGCCAGCACTCAGGTGGGAGACACAGTAGTGAGGAGAGGTCTGATCCGCTGCAATCAACTTGTGAAGCTTAATCTCAGCCGCACACGGATCACAGATCACGGTATAAAGTTCTTGAAACGCATGCATCTGGCCCAGGTGAACCTTGATGGCACCGGTGTGAGTCTGATGGGTATTGCGAGCCTTCTCTCTTTGACTAACATCAGCAGCATTCGGGCCAGCAACACCCGCAGCATTCCTCCTGACGAGGTCTCGGATGAGGAGTGGGAAGCCCAGTGAGCATCGATAACCTTCAGTTGGTCCGTGCATACTGTACCTAAGCGCGTCTCTGACTGCTGCGGTCCCCTTTTAGCCCCTGAAACATGCTGCCATCGGGAtactctaaaaaataaaaaaacagcataacTGAAACACTCCTTCTATTTGCACTGTTTCTACTGCAGCTAGTGCCACTAATCTGTCAATCACGCACGTTACCAAGTTGAAACCTTAAATGAGAGCCTGGTATTTAAATACTAGGCCATTAACATTTACATATATAGAATCAATCTGCATTGACTTGCATACACACTGCAGCCCTTTTGTCTCTGGAGAAACTCCACCTGACAAACTTTAAAGCTTTACGTGCAGCCTTATAGGTTGGAGCTATCTGTGTTTCCCCCGGTTGGCACTTTTTGAGCCGACAGGCAggaacaaaactaaatgttggAAATGTAACGTAACACCGCTTGTATTTTCAGACAGTAATGACTAATTAAATGAAAacctaaataaactaaatatggTTGCATAATTTATTTTGAAGGATGTGAAGGCAGATTATCTCTTCCAGTAATCATCCTATCACTTATTAAAAGTAACATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299262 lncRNA downstream 2429 19652354 ~ 19656460 (-) True G221143
TU299256 lncRNA downstream 57950 19600706 ~ 19600939 (-) True G221138
TU299191 lncRNA downstream 114497 19517372 ~ 19544392 (-) True G221095
TU299185 lncRNA downstream 212595 19446045 ~ 19446294 (-) True G221090
TU299181 lncRNA downstream 219350 19436966 ~ 19439539 (-) True G221088
TU299268 lncRNA upstream 2984 19669704 ~ 19669954 (-) True G221146
TU299271 lncRNA upstream 12348 19679068 ~ 19730782 (-) True G221149
TU299286 lncRNA upstream 51728 19718448 ~ 19719622 (-) True G221160
TU299276 lncRNA upstream 57379 19724099 ~ 19754508 (-) True LOC120551913
XR_005637931.1 lncRNA upstream 58153 19724873 ~ 19754318 (-) False LOC120551913
XM_039789763.1 mRNA downstream 10088 19639856 ~ 19648801 (-) True chpf2
XM_039789579.1 mRNA downstream 73441 19518530 ~ 19585448 (-) True asap1b
XM_039790486.1 mRNA downstream 144852 19475880 ~ 19514037 (-) True fam49bb
XM_039789932.1 mRNA downstream 328335 19315583 ~ 19330554 (-) True ankha
XM_039789935.1 mRNA downstream 328335 19317254 ~ 19330554 (-) False ankha
XM_039790437.1 mRNA upstream 222962 19889682 ~ 19908076 (-) True kif9
XM_039789853.1 mRNA upstream 283261 19949981 ~ 19954961 (-) True cdv3
XM_039789854.1 mRNA upstream 283261 19949981 ~ 19954960 (-) False cdv3
XM_039789951.1 mRNA upstream 291564 19958284 ~ 19999250 (-) True tmem108
XM_039789952.1 mRNA upstream 291564 19958284 ~ 19999246 (-) False tmem108
TU299133 other downstream 331995 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 709408 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 1027414 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 1034091 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2783589 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 1169577 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2323297 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2536063 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2536063 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 5296725 24963445 ~ 24967990 (-) False msl2b

Expression Profile