RNA id: XM_039789763.1


Basic Information

Item Value
RNA id XM_039789763.1
length 3083
RNA type mRNA
GC content 0.51
exon number 6
gene id chpf2
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19639856 ~ 19648801 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCGGTAAAATAATGTAAGCATTGGCTTGGACTACTTAGACACGCTCGTAGACAATACAATTAAATACAATTAAAGGCTGGTGATGGATAGTAGATTGGAGCTTTCACACCGCCGCGCAGTAGCTCGCCGCCTCCAGTTATCTGATTTCAATGAGGGAAAGGCCAAAGGCGGCAAGGGGAAAGCGGTGGTACGAAGCGGTTTCCGCCGCAGCCCACGTGAACGCGCTCAGATTATGCTCTGAATCATTATACTGGCCTGCTTTACCCCTCATCCTCGGGCTGTCTCTGGGATGTAGTCTGAGCCTTTTGATGGTGTCCTGGACACAAGGGGATACCGATGACTCCTGTGGGGATGAACTGGGCAATGGGAGGCTTTTCATGGGTAGAGCAGATGCCCAGAGAGACTCAAGGGATGAAGCTGCAGATGAAGACGTCCAGCCACGTATCGTGCCCTACCACAAGGACCCAAACAAGCCTCACAAGAAAGTCCTCAGAACTCGTTACATTCACACTGAACTGGGCATCCGAGAACGTCTGCTGGTGGGTGTACTGACCTCCCGGGCCACCCTCAACACGCTGGCCGTGGCGGTGAACCGCACTGTTGCCCATCGCTTCCATCGCACCTTTTTCTTCACAGGCCTGCGCAGCCCTAAGGTGCCTCACGGCATGACCGTGGTTGCTCACGGCGACGACCGCCCAGTGTGGCTGATGTACGAGACGGTTCGTCACCTCCATCAGCACTACGGCTCTGACTATGACTGGTTCCTCTTAGCCCAGGATGACACTTACATGCAAGCAGATCGTCTGTCAGAGCTGGTGGGCCACCTCAGTGCAGGTCAGGACCTCTACATGGGCAGGGCGGAGGAGTTTATTGGTGGAGAAGAGAAGGCACGCTACTGCCACGGGGGCTATGGCTACCTGCTGTCACGCAGTCTGCTGGCCCGTCTGCAGCCCCACCTTGACACCTGCCGTAATGACATCCTCAGTGTGAGGCCTGATGAGTGGCTGGGCCGCTGCATTATTGACTACCTGGGTCTCAGTTGTGTGGAGGTGCACCAGGAGATGACCTATCGTTACTTTGAGCTCGGAAAAAACGCAGATCCAGAGCGCGAAGATAGCATACCGTTTAAAAATGCCTTCACAGTCCATCCTATATCAGAACCAAATCTCATGTACCGCCTACACAAACGCTTCAGCCAGATAGAGCTGGAATGGACTTACCTACAGATACAACAGCTGCAGGTGCAGATCAACAACCTGAGTGACCTGACGCCAGAGGGGAAGGCTGGAGTCACGTGGCCCATCGGAATCAACCCTCCCTTCAAACCAAGATCCCGTTTTGAGGTTATAAACTGGGAGTACTTCACTGAAGAGCATATTTACTCATGCATTGACAGCTCGCCCAAGTGTGAGATGAGAGGGGCTGACCGTGCGGATGTAAACGCAGTTCTGGAGATTGCAGTGGGGCGTCTGAATGAACGCTACCAGCCCCAGCTACGCTTCCGCAAGAGGCGTCTGCTTAATGGTTACAGGCGCTTTGATCCCACGCGTGGTATGGAGTATATGCTGGACCTTGCGCTGGAGGTGTACACCCAGAAAGGCCACAGTCAAGTCATTGCCAAACGGGTTAACTTACTGCGACCTCTCAGCGCGGTTGAGATTATCCCCATGCCCTATGTGACAGAGGCAACTCGGGTGCAGGTCATCCTACCTGTCACTGCCCAGGACCAGGACTATGTTGGTAACTTCCTCGACATGTATGTGATGAACACGTTGGACACCCATGACAATGTTTTACTCACGTTCCTGTTCATCTATGATCCCTTTGATGCACAGCGAGTCAGCCAGACCGATGTGTTTGCTGGCATTAAGGCCATGATCGGGGAGGTGGAGAAGCGCTACGGAGACGTGAAGATCCCCTGGATCAGCGTGAAGACGGAGGTGCCCTCGCAGGTCAAGCTGATGGACATCATCTCTAAGAAGCACCCAGTGGACACGCTGTTTTTCCTGGCCGGCGTGTGGACCGAGGTCAATGCTGACTTCCTGAACCGCTGCAGAATGAACGCCATCAGCAACTGGCAGGTGTTCTTCCCCATCCACTTCCAAGAGTACAGTCCTGCTGTCATGTACCGCGACCAGCAGCCCTCCGCTGCCTCCTCCTCTTTTGCTTCGGAGTCGCTGCGAGGGCCCGCCCACTTTGACCGCCATGTCTTCGACGAGGCTTGCTTTTACAATGCGGACTACATGACCGCGCGGACCAAGATGGCTGCTGACATCTTGGACAACGAGGAGCTGCTGGAAAGCATGGACGTGTACGACATATTTGTCCGTTACTCAGGTCTACATGTGTTCAGAGCTGTAGAGCCGGCGCTGATCCAGAAATACGTGCGGCGAGCGTGCAACCCCCGATTCAGCGAGGATATCTACCACCGCTGTGTCCTCAGCAACCTGGAGGGCCTGGGGTCACGCTCACATCTAGCTATGGCTCTTTTTGAGCAAGAGCAGGCCAACAGCACCTAGAGGCCTTCTCGTGCCTCAAATACTGCCTGGACTAATGAATACTCACACAGAATAAAGAGAACTATAATATAGTACTTTTGTGATCCATACACTGAAATTCTTGCCCTTGTATTGGGCAGAAAGAGGTCAGGATCAACTTAAGAACCGCATCAGCTTGCTCATGGACACTATGACAGAGTAAATGTGTGCTGAAGCATACATTCTTCCAGCTGAAAATCTCTTTGCTCAGTAGTTCTGAGTACTAATGACTTAGGAGTCTGTAACTGTGACTCTGTCATGTCTAGACCAATTTTGAGTCATGGAGGTGTCAGATTGCGGCCTACTGTTTGTATTGCTGCCATTGACTTATTCTTTCAGGAGCCAAACAACCATATTTATACTccaattttaaaattaaaataaaagaaggTTGTGtcttgaaataaatgaaaaaacaaaaaacttgagCCATAAGTCTTCCTTAGTGAAGATGTTTAAAGTGATACTGGAAACAAGCTGAAGCCGTTGgctgcctttttcttttcttttttttaagaggtATTAAAGAGTGATATTTCTGTTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03419 CHPF2; chondroitin polymerizing factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299256 lncRNA downstream 38917 19600706 ~ 19600939 (-) True G221138
TU299191 lncRNA downstream 95464 19517372 ~ 19544392 (-) True G221095
TU299185 lncRNA downstream 193562 19446045 ~ 19446294 (-) True G221090
TU299181 lncRNA downstream 200317 19436966 ~ 19439539 (-) True G221088
TU299179 lncRNA downstream 265340 19372591 ~ 19374516 (-) True G221086
TU299262 lncRNA upstream 3553 19652354 ~ 19656460 (-) True G221143
TU299268 lncRNA upstream 20903 19669704 ~ 19669954 (-) True G221146
TU299271 lncRNA upstream 30267 19679068 ~ 19730782 (-) True G221149
TU299286 lncRNA upstream 69647 19718448 ~ 19719622 (-) True G221160
TU299276 lncRNA upstream 75298 19724099 ~ 19754508 (-) True LOC120551913
XM_039789579.1 mRNA downstream 54408 19518530 ~ 19585448 (-) True asap1b
XM_039790486.1 mRNA downstream 125819 19475880 ~ 19514037 (-) True fam49bb
XM_039789932.1 mRNA downstream 309302 19315583 ~ 19330554 (-) True ankha
XM_039789935.1 mRNA downstream 309302 19317254 ~ 19330554 (-) False ankha
XM_039790862.1 mRNA downstream 426204 19196583 ~ 19213652 (-) True vps41
XM_039789762.1 mRNA upstream 10088 19658889 ~ 19666720 (-) True si:ch73-173p19.1
XM_039790437.1 mRNA upstream 240881 19889682 ~ 19908076 (-) True kif9
XM_039789853.1 mRNA upstream 301180 19949981 ~ 19954961 (-) True cdv3
XM_039789854.1 mRNA upstream 301180 19949981 ~ 19954960 (-) False cdv3
XM_039789951.1 mRNA upstream 309483 19958284 ~ 19999250 (-) True tmem108
TU299133 other downstream 312962 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 690375 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 1008381 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 1015058 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2764556 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 1187496 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2341216 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2553982 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2553982 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 5314644 24963445 ~ 24967990 (-) False msl2b

Expression Profile