RNA id: XM_039789853.1


Basic Information

Item Value
RNA id XM_039789853.1
length 2907
RNA type mRNA
GC content 0.44
exon number 5
gene id cdv3
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19949981 ~ 19954961 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTTCCGGGTTACGGTACAGATTTGTCAAATAGCCCCATAGCCCGTGCATGGCATGGTCGATTCAGTCAGGAATCAAGGGTGGACATTTTTATCAGTCTGTAACAGAAGTTAAACCGTCAGAGTAACGAGTAACTCCATCTTTTCTGACCGTTTGAACAGCTGTCTTCACTCTCGAAGAGCAGATTTTCACATTTGTCATAGCTCGGTTAGCGTACTAGTTAACGTTGCTCTTTGAAAATGGCGGATCTACCACCAGAGAAAAGCCTGGACGATTTCTTTGCCAAGCGggataaaaagaagaagaaagaaaaaggtaaGGGCAAGGAGTCCACCACCGGGCCCACGTCGGCTGTGATAAAAAAGAccaagagggagaaggagaaatCGGCGAAAAACGACAATCAAGACGCACAGATTGAAaagGAGGACGAGGAATGGAAAGAGTTTGAGCAGAAAGAAGTGGACTACAGCGGGCTCCGGCTCCAAGCTTTACAGATAAGTGacgagaaagaggaggaggactaCGAGAAGGAGGAGGTTGGTGAGGATGGAGAGATCATTCTGGTCAGCGGAGACAAAGTGTCTGGTCCCTGGAACAAGTCTGGTGCTGCTCCAGCTCCTGCTGCTGCACCTGTGGAGGATGTAGAAGAGCCTGAGTCAAAGCCTTCTGGTGTATATCGCCCTCCAGGGGCTCGCATGTCCACCACCAGACGAGCTCCCACCCAGGGGCCTCCTGAGATCTTCAATGATGCACAGTTCCCCTCTCTACTGGCCACCGCCAAGCATGTGGAGACACGCAAGGACCGAGAAATGGAGAAGACCTTTGAAGTTGTGAAACACAGGAACCGTGGTAGAGAGGAGAGCGGCGGCGCCTCTATGCAGCAGTTGCAGCTTGACAACCAGTATGCCATCCTGGGGGATAAGTAGAGCAGCTCCCCACCGCCCCCTGGCCCCTTCAGCACGGTCCTGCCAAGCCCCTCGAAGGAAGCGTAACTCCAGCTGTGTTGACTGCAGTCCTGAAAAAGCTCATCTTGCCACCATCTTAACACTggttactaacacacacaaacacacacacacacacacacacacacacacacatagcctcatatacatacatacatacatacatacatacacacacataaacagcaATACCACTGCACCACATACAGTGACACTCCCTTTAAATAAATAGTAACACACTTTACATATATTGGTTGGCAAAACTGAAGGACTGCACCTTAAGGGGCTGTTGAAAGAGGGAAGAATTGAAAAGGAATTACACGCAAAATACACCCAAACGTACAacactgcagcagcaacaaTGGACGACGACATATTTGTCCTTTTGTGGATTGTACTCAGAGCAGCAGTTGTGTGGCGCAACGTTTCTCTGGACTTCATCTTGCTTTGATAAAGCCACAGAGGATAACTTTAGGCAAGATGATTTTACAAACTTCTGTGAAAATATCTATTTTTTTGCAAGATCGTTATAACCCAATCGCACATGGTAATTTGGGGTGTGTTTTTGAGTTGCGGTGGGGGGGCTTCAGGAGTGGGGATACTACCTCTGCAGCCTAGCTGGTGGTGACCATGTGgactgagctttttttttttttctcgctgTGGTGGTGAACGGGGCAAACAccagcccccctcccccccacataGAACCCGGCCATCAGGCTCTTTAGTTTAGAAACTTGaagctttgctttttttttctccttcatgACGATGACACTCTGCAAAGATCTATGGACAAGAAGTGATGGGTTGTGGTCCTCATTTAGAATTTCTATATTAAGTGGCCTTACTGATAGAGAAACTGCTTTGTCATCTGAAGAGAACTTGGCTTGTTGTCTCACGGGCTGCTGCCTGCCTCTGGTTCTCACCACTTTTTGACAAacaccccctccctctcccataTACAAACGAAGAAAATCCTTCTGTTCAAGAATGTAGTGTTGTAGTTTGCCTGATGATTACAACTACTAACTGTCTTTCATATCCACTGTTGGATTTTGCTGCCCCTACTTCATATTGGTCTTTTTAGACATCAGCAAAAGAGAaattaaagcttgtttctaatCTAAAACCATTCTTTTAgtaacaaatgctttactgtgGTTTGACACCAGATGGTCACAGATGTTACAGTATCAAGAAAAATGACAGGAAACCAAACTACTTTAAAAGCGTATTTGTTGAGGTAATTTGGTTCACAACTTTTATAATTTGTTGTAAAGTGGTGTAGTTttaagacttttcttttttttttaaatcaaggctttTCCTCATGAGTAAACGTGCTGTGTCAGCCCTTGTTGCAGTTGTGTAGAACCGGTAGCTTGTGCATAACTTAATTTCCAGAGAGTTACAGTGACTCCACGTCTGTGAAAACAAATGTCACCAAACCAACGGAGTACTGTCCACTTAACAAAACAGTGGTATGCCCAGTTGAAATCAAATGAGGTTTTACTACAAACATAGTTATGTTTTAGAAAGGTGAAGAACTGGATTTATGTTCTGTTTCAGTCCTTTCCATATAAGATGTCGGGGAGCGTTGATCTCTGCTGGAACACTTTGGGTGGACGTAGATAATATTTGTGATGAAAAGAGAAGAgcctaacacaaaaaataaagtgatcCTTGTGACTGAAGTCTTGTCTGAATCTttaaacattgaaaatggggatttactgtatacagtgtctttttttccataaaagGTGTTGTCTAATTGTAAACTTGACACTTGTGTTAACCTGCTATGCCTCCCATAATCACTTATTTAGTGTCTCGATTTGACCAATCATGGGAAATTTATCAAAAGTTCCAGCGCTTTTTGAAAAATGACCTTATACCAAGGATattaacaaataaaagaaattttCTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299312 lncRNA downstream 131866 19814070 ~ 19818115 (-) True G221183
TU299310 lncRNA downstream 138846 19808752 ~ 19811135 (-) True G221182
TU299276 lncRNA downstream 195473 19724099 ~ 19754508 (-) True LOC120551913
TU299468 lncRNA upstream 213720 20168681 ~ 20262155 (-) False G221287
TU299469 lncRNA upstream 217942 20172903 ~ 20262155 (-) False G221287
TU299476 lncRNA upstream 252777 20207738 ~ 20213258 (-) True G221293
TU299467 lncRNA upstream 303742 20258703 ~ 20262155 (-) True G221287
TU299546 lncRNA upstream 514185 20469146 ~ 20469453 (-) True G221359
XM_039790437.1 mRNA downstream 41905 19889682 ~ 19908076 (-) True kif9
XM_039789762.1 mRNA downstream 283261 19658889 ~ 19666720 (-) True si:ch73-173p19.1
XM_039789763.1 mRNA downstream 301180 19639856 ~ 19648801 (-) True chpf2
XM_039789579.1 mRNA downstream 364533 19518530 ~ 19585448 (-) True asap1b
XM_039790486.1 mRNA downstream 435944 19475880 ~ 19514037 (-) True fam49bb
XM_039789951.1 mRNA upstream 3323 19958284 ~ 19999250 (-) True tmem108
XM_039789952.1 mRNA upstream 3323 19958284 ~ 19999246 (-) False tmem108
XM_039789953.1 mRNA upstream 4304 19959265 ~ 19999247 (-) False tmem108
XM_039789949.1 mRNA upstream 47495 20002456 ~ 20018989 (-) True topbp1
XM_039790937.1 mRNA upstream 65172 20020133 ~ 20055209 (-) True LOC120552713
TU299133 other downstream 623087 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 1000500 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 1318506 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 1325183 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 3074681 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 881336 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2035056 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2247822 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2247822 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 5008484 24963445 ~ 24967990 (-) False msl2b

Expression Profile