RNA id: XM_039789868.1


Basic Information

Item Value
RNA id XM_039789868.1
length 2361
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120552124
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22679691 ~ 22688402 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caacccaACTGCTCTCAGCTTATACTACACTGATAAATCAGAGTACACGATAGAGTAGTCCAGTGTGCCACTGCTCTTACTTTAATTTGACCGCATAGTGTTTGGGGGGGGTTTTGGCCACGTGGATATGAAGGCCTTTCAGGTCCTGTTCATGCTTCTCCTGACTGCTGCGGCAGCAGACGGTCAGTCTTTCCACCCGGGAAAATGCCCGCAGCCACCCGTTCAGGAGGACTTCAACGTTACAAGGTACATGGGCACCTGGTATGAAATAGAGAAGCTCCCAGCTGTATTTGAAAGAGGAAAATGCAACCAAGCAACGTACAGTCTTCTCGCTGATGGGACGGTCAAAGTTCACAATTCAGAGCTGGTGCTTAATGGGAAGATAAATTCAATTGAGGGTGTTGCCAAAGTGAAAAACTCTTCTCAACCTGCTATTCTGGCTGTCAGCTTCTTTAAAGGTGTTCCAGACAGTCCCTACTGGGTACTGGACACAGACTACCAGTCATATTCTCTGGTGTACTCTTGTTCGGACGTGTTTGGCCTTTTCCACGTTGACTACGCCTGGATCCTGGCTCGCACTCGGGTGTTGACTGAGGATGTCATTAGCCAGTTACACGATGAGATGGCTTCTGCTGGTGTCAACTTAAACCGCCTTACAGTCAGTAATCAGACTGGTTGTGACCAGACCACAGCATATGATTTCCCCATATCTGGGACACGGTGGCATCCagagaaaaatacatttgaatggGGGAGGCCTTACATTCCACACTCTCCATCAGCTGTCAAGACCACCTTCTATGTGGCTGAATTATCTGTCAATGAAGGGCCGTTTGGATTTGAAGTCTGGGCAGACGGTGGGAGGATGGATGTAGGACTAGATCCGTCGTCTGCTGGAAAGGCAGTCTCAGGTTCAGCATGCGGATGCTGGGAGTCCAAATGCAAATCAAATTGAGCAAGAACAGATGAGAGTTGCATATTGTGGAAAAACTGTATGCCAATGTTGTGCTTAGGCACAGGGACAGGATGGAGGTTAGGGCCTCCTCAAACACTCGTTCTGGTAGCCTGAAGCATTCCTCGAAGAAGTTCACCAGAGACTGGCTGAGGTGCTGCCTTGTTGCTTCACTGTGAATGAAGTGGCCTTCATCTGGGTAGATCTGAGACACAAAGAATAGGTGTGTGCCAGGACGAGGAGACAACCGGACGGCGGCACCCCATGAAGGCTAAGTGTAGCATTTGCTATATTGATGGACCCCAGGGGACTACACCTCTGACTTCAGATACAAAAGGAGTAATGCCACCTGCAAAAGTTTTCAGATGACTCTGCAATTGTGGGTTGTATCAGCGTACAACAGGAAGAGGAATACAAAGGACTGGTGGACTACTTTTTTGGACGGTGCAAACGGAACCACCTGCAGCAAGACAAAGGAGCTGACAGTGGACTTCCGCAGCACTAAGCCTTCTCTGACACCTGCATCCATCGAATGGGACGATGTTCAGGTGGCTCACTCCTATAAATACCTTGGAGTGCACCTGGACAACAGGCTACAGTGGGATGGAACCCAGAGGCCCTCTACGAAAAGGGACAAGAGCCAGCTATACTTCCTGTGGAGGCTCAGAGGCTTCAACATCTGCAACAGAATACTGCAGATCAGAGACGCTAGTAAGCTCAACAAGTTAGTCAGGCCAGATCAGTGAGTGGAATTGAGCTGGACTCTCTGGAGGTGGTGACGGAGAAGTGGATGCTGTCCAAGTTGGTCAGCATCCTGAACAACATCCCCCATCCCTCCATGACATGCTGGTCGAGAAGAGGAGAGTCTTCAGCCAAAAATTCATACCCAGGAGGTCATTCCTGCTGGTGGccatcaaattttttttattctgctgGACCAACTGGTCATAGACTGCTGAGATCCTTACAGACTCACTAAGTGAATAGCATTTCTGCAACTCTGACATAGTGCtatctttttaaaatataattataataacttCCAATCTGCACACTGTATGAATGCACATGTTTATAGGACATACTTTTTTGATTGTGATTCCTTGCCCTATTCTGTcttcattgttttctttttgtctatATATCTGATGGTTTACTTCTGCTGGAGGTAGTAGCACCCCTACTACCTACTACCCTAAGCctgcctatttttttttaactcaagtaAACCGGCTGAGAATAAGGTTAACAAGATTAGtgattgtattttttgtttgtttgtttattttcttatGGTTTGATGGGTTTAAGGTCAGTTGTGTTTTGTTGACCTTGGCCCACCCTGGGTTCTGACTAGGATCCCCCCTGTGTTCCTGTGGGACTATAAATAAATCAGATTGTTACCACTG

Function

GO: NA

KEGG:

id description
K03098 APOD; apolipoprotein D and lipocalin family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300182 lncRNA downstream 339821 22337075 ~ 22339870 (-) True G221857
XR_005638025.1 lncRNA downstream 344207 22325273 ~ 22335484 (-) True LOC120552529
TU300161 lncRNA downstream 371457 22307488 ~ 22308234 (-) True G221844
TU300160 lncRNA downstream 378476 22300418 ~ 22301215 (-) True G221843
TU300154 lncRNA downstream 380116 22243807 ~ 22299575 (-) True G221837
TU300267 lncRNA upstream 270964 22959366 ~ 22960660 (-) True G221926
TU300269 lncRNA upstream 293562 22981964 ~ 22982351 (-) True G221928
TU300274 lncRNA upstream 351447 23039849 ~ 23040134 (-) True G221933
XR_005638061.1 lncRNA upstream 382552 23070954 ~ 23071831 (-) False LOC120552653
XR_005638060.1 lncRNA upstream 382552 23070954 ~ 23071535 (-) True LOC120552653
XM_039790526.1 mRNA downstream 461310 22202767 ~ 22218381 (-) False smpx
XM_039790527.1 mRNA downstream 462232 22202767 ~ 22217459 (-) False smpx
XM_039789531.1 mRNA downstream 479645 22195236 ~ 22200046 (-) True LOC120551932
XM_039790569.1 mRNA downstream 559080 22115085 ~ 22120611 (-) True LOC120552473
XM_039789698.1 mRNA downstream 668605 21994544 ~ 22011086 (-) False tfr1b
XM_039789867.1 mRNA upstream 2628 22691030 ~ 22696864 (-) True ggh
XM_039790663.1 mRNA upstream 8625 22697027 ~ 22801749 (-) False LOC120552530
XM_039790664.1 mRNA upstream 8625 22697027 ~ 22801745 (-) False LOC120552530
XM_039790665.1 mRNA upstream 8625 22697027 ~ 22773784 (-) True LOC120552530
XM_039790272.1 mRNA upstream 152625 22841027 ~ 22888231 (-) False LOC120552328
TU300141 other downstream 461325 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 462142 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 670603 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 1817026 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 3352797 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 2275043 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 2368191 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 2868071 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 3042354 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 3139689 25828091 ~ 25834224 (-) False mynn

Expression Profile