RNA id: XM_039789916.1


Basic Information

Item Value
RNA id XM_039789916.1
length 1050
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC120552143
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31233754 ~ 31238960 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCCCCACCTAAAGCTTCATCTGCGCAAAACttgtgtgtctgtgtgcagctcGGCAGTCTGCCACCAGAGATCGGACAGCTGAAGAAACTCAGAGTTTTATTCGTCTACAGAAACAGACTGACGGAAGTTCCTGCAGAGCTGGCAGCCTGCACGCAACTCGAGGTTCTGAGTTTGGCCAACAACCAGTTGTCTTCGCTGCCCGAGTCGCTCTGCAGTCTGACCCGCCTGAAGAAACTCAACCTCAGCCACAACAACATCGCGTACCTCCCGGCCTGCATCGGCAGCATGAAGGCTCTGgtctTCCTCCACCTCTCCTGTAACCGTCTAGAGAATCTTCCCGAGAACATCCGGTCTCTGGAGGAGTTAAAGATCCTCATCGTGGAGGGAAACAGCCTCCACTCCCTGCCCAAAGCCCTCTGCTCCCTCCCCAGGTTGGAGCTGCTGAATCTGGACTTCAACGACATCAAGGACGTCCCACAGGAGCTGTTCCATCTGTCCCGGCTGCAGAGACTTGCCGTCCATCCGTTGGATAAAGGGTTGCACCTCGTCCACAACCCGCTGCAGAAACCTGTCAGGGAGGCGCTGGAAGGGGGGGGGCTCAGCATGCTGTTCAGCTACCTGAGggcagggggcggggcttattAACACCTGGGCGGGGCTTAGTACCGCCTGGGCGGGGCTTATTAACACCTGGGCGGGGCTTAGTACCGCCTGGGCGGGGCTTATTAACACCTGGGCGGGGCTTAGTTCCACCTGGGTTAAGTGCATTAGTGCGTCGGTCAACAGAAAGTTTAGGAAACAGGAAGTTGACCGACACACTCTGTGAAagcccaaaaaaacaacaggtgAAGAGGTGAAGAGGtgaacaggtgaacaggtgaacaggtgaacaggtgaagcaaacagATATATTTTTGTGATGAATTATTCTGTCTaaacaacacatgttgtgttctggtttcagaatgataaAGTTTAAAAGCAGTTCTTACCTCTGTCTCCCTGTTTTACATGAATGTGTCCCgttaataaaatgcattataatCA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303614 lncRNA downstream 22394 31210761 ~ 31211360 (-) False G224195
TU303597 lncRNA downstream 24963 31207908 ~ 31208791 (-) False G224194
TU303599 lncRNA downstream 24963 31207908 ~ 31208791 (-) False G224194
TU303602 lncRNA downstream 24963 31207908 ~ 31208791 (-) False G224194
TU303604 lncRNA downstream 24963 31207908 ~ 31208791 (-) False G224194
TU303583 lncRNA upstream 5049 31244009 ~ 31263563 (-) False G224184
TU303581 lncRNA upstream 16556 31255516 ~ 31258479 (-) False G224184
TU303582 lncRNA upstream 16556 31255516 ~ 31324927 (-) False G224184
TU303674 lncRNA upstream 17148 31256108 ~ 31283580 (-) True G224226
TU303677 lncRNA upstream 18739 31257699 ~ 31360661 (-) True G224229
XM_039790826.1 mRNA downstream 131267 31098066 ~ 31102487 (-) True LOC120552642
XM_039790832.1 mRNA downstream 213568 31017830 ~ 31020186 (-) False LOC120552646
XM_039789917.1 mRNA upstream 59638 31298598 ~ 31328575 (-) True zbtb14
XM_039789570.1 mRNA upstream 91736 31330696 ~ 31337391 (-) True LOC120551970
XM_039790311.1 mRNA upstream 224652 31463612 ~ 31511341 (-) False epb41l3a
XM_039790310.1 mRNA upstream 224652 31463612 ~ 31507409 (-) False epb41l3a
XM_039790312.1 mRNA upstream 224652 31463612 ~ 31507408 (-) False epb41l3a
TU303612 other downstream 22394 31210761 ~ 31211360 (-) True G224195
TU303394 other downstream 552172 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 740375 30475318 ~ 30493379 (-) False LOC120552614
TU303357 other downstream 767885 30461502 ~ 30465869 (-) False G224031
XR_005638047.1 other downstream 813207 30406956 ~ 30420547 (-) False LOC120552615
TU303705 other upstream 61063 31300023 ~ 31301032 (-) True G224245
TU303660 other upstream 95846 31334806 ~ 31337397 (-) False LOC120551970
TU303782 other upstream 377110 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 386336 31625296 ~ 31660992 (-) False G224289
TU303789 other upstream 403935 31642895 ~ 31652166 (-) False G224289

Expression Profile