RNA id: XM_039789935.1


Basic Information

Item Value
RNA id XM_039789935.1
length 1418
RNA type mRNA
GC content 0.51
exon number 12
gene id ankha
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19315583 ~ 19330554 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGGATTTTCCATCTCTCAGTCCTTACTGGCCTCTCATCCGCTTTCTGGTGCCTTTGGCGATCACCAATGTTGCCATCGACCTCGGGGAACAGGCCCTCAACAGGGGCATAGCCACAGTCAAAGAGGATGCAATTGAAATGCTGGCCAGCTATGGCCTGGCCTACTCCCTGATGAAGTTCTTCACCGGACCCATGAGCGACTTCAAGAATGTTGGTTTGGTGTTTGTCAACAGCAAGAGGGACCGGAGGAAGGCTGTGTTCTGCATGGTGACGGCCGGGGTCATCGCGTTCGTCCTTCACATCTTGATAGCTTACACGGATTTAGGATACTACATCATTAATAAGCTCCACCATGTGGACGAATCTGTGGGGCACAAGACAAGAAAGGCGTTCTTATACCTggctgcatttcctttgttgGATGCAATGGCGTGGATTCATGCAGGGATACTTCTCAAGCACAAGTACAGCGTCATAGTAGGCTCAGCCTCAATATCTGATGTTGTGGCCCAGATTGTGTTCGTGGCCATTCTCCTCCACAGTAACCTAGAATGTGTGGAGCCTTTACTTATCCCGATCCTTTCCCTGTATATGGGTGCCTTGGTCCGTTTCACCATTGTCGGTATGGGTTACTACTGTAAAATTCACGACAACATCCCAGACTCCAGTGGACTTGATGTGGGCGGTGATGCCACTATCAAAAAGATGCTGATTTTCTGGTGGCCCCTGGCCCTCATCCTGGCCACTCAGCGTATCAGCCGACCCATCGTCAACCTTTTTGTGTCTCGCGACCTCAAGGGGACCTCTGATGCCACAGAGGCTGTGGCTGTCCTCACGGCCACATACCCTGTGGGTCACATGCCCTACGGTTGGTTAACCGAACTGAGAGCAGTGTACCCTGCCTTTGACAAGAACAATCCCAGCAACAAGATGAACGCCGGCACCCCTGTCACCAAGTCCCATATCAAAAAGTTTACATCCTGCTGTGTAGCTCTGTCACTCACgCTTTGCTTTGTGGTGTTTTGGACTCCTAACATATCCGAGAAGATCCTGGTTGATGTCATTGGAGTGGAGTACGCTTTCGCTGAGCTGTGTGTGGTCCCGCTCAaaattttctccttttttcccGTGCCAGtgaCGGTTCGGGCTCATTTGACTGGATGGCTCATGACCCTGAAAAAGACCTTTGTGCTGGCCCCCAGCTCGGTTCTCCGCATCATTGTCCTCATCACCAGTCTAGTTGTGCTGCCTTATATGGGGGTTCACGGGGCCACGCTCGGGGTTGGTTCCCTTCTGGCCGGCTTCATAGGGGAGTCGACAATGGTTGCCATAGCAGCATGCTATGTTTATCGACAACAGataactggctaaaatgtgcctgatacagactgaatgaatgaatgaggaaatgagag

Function

GO:

id name namespace
GO:0035435 phosphate ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015114 phosphate ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637963.1 lncRNA downstream 27 19316654 ~ 19317227 (-) True LOC120552156
TU299030 lncRNA downstream 274038 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA downstream 274038 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA downstream 274038 19040265 ~ 19043216 (-) False G220972
TU298921 lncRNA downstream 487269 18829751 ~ 18829985 (-) True G220893
TU299179 lncRNA upstream 42037 19372591 ~ 19374516 (-) True G221086
TU299181 lncRNA upstream 106412 19436966 ~ 19439539 (-) True G221088
TU299185 lncRNA upstream 115491 19446045 ~ 19446294 (-) True G221090
TU299191 lncRNA upstream 186818 19517372 ~ 19544392 (-) True G221095
TU299256 lncRNA upstream 270152 19600706 ~ 19600939 (-) True G221138
XM_039790862.1 mRNA downstream 103602 19196583 ~ 19213652 (-) True vps41
XM_039790858.1 mRNA downstream 121731 19182050 ~ 19195523 (-) False LOC120552661
XM_039790857.1 mRNA downstream 121763 19182050 ~ 19195491 (-) True LOC120552661
XM_039790357.1 mRNA downstream 198272 19112196 ~ 19118982 (-) True lypla1
XM_039790451.1 mRNA downstream 246837 19069163 ~ 19070417 (-) False LOC120552400
XM_039790486.1 mRNA upstream 145326 19475880 ~ 19514037 (-) True fam49bb
XM_039789579.1 mRNA upstream 187976 19518530 ~ 19585448 (-) True asap1b
XM_039789763.1 mRNA upstream 309302 19639856 ~ 19648801 (-) True chpf2
XM_039789762.1 mRNA upstream 328335 19658889 ~ 19666720 (-) True si:ch73-173p19.1
XM_039790437.1 mRNA upstream 559128 19889682 ~ 19908076 (-) True kif9
TU298948 other downstream 367773 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 685779 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 692456 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2441954 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 2522130 16783069 ~ 16795124 (-) False LOC120552205
TU299660 other upstream 1505743 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2659463 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2872229 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2872229 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 5632891 24963445 ~ 24967990 (-) False msl2b

Expression Profile