RNA id: XM_039789966.1



Basic Information


Item Value
RNA id XM_039789966.1
length 5342
RNA type mRNA
GC content 0.53
exon number 21
gene id kcnh2b
representative False

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 1823043 ~ 2201660 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


actgtcgGGTTGTACAGCGTATCGTGTCGGATGTAAATGCTCCTGCCAAAACCCTTGCGGCTGCCATTTGTAGAGCCCGTTACTGACTTTTTGCTGTCCAGGTCAGTGCTTCCTGTGTATGGTGGACGTGGTGCCGGTGAAAAACGAAGATGGCCTGGTGATCATGTTCATCCTGAACTTCGAGGGCTTGACAGAGGAAGCCCTCCTCGTCCACAAACAGCAGCTCAACCACCGCCTGCCCACCTGGCTCGTCACCGGTCGTCCACGAGGCTTTAAGCTGCGTCTCCCCCTGCTGCGCTCCATGTCCAACAGTAAAGTGTCCCTGAACGACACAGAGGCAGGTCACATCCCCACTGCCACACCCCTGCCGCTGCACCCAGACCACCACAGTCATGAGTCCTTAGGCCTGGGGGAGTTCCTGCCTCTTCCCCCTTTAGCGCTAAACCACCAGGAGCAAATCAGTGGAAGCAGGTCAGCTCTACAGAGTTGGCCAGAAGACCACCAGGAGGACCAGCACACCTTTCTGGGCCCTGACCCTCCTGTACCcgctccttctcctcctccacctccccacAGAGCCCACCTTGTGGGTCCCCTCACCCAGTCGTCCCCCTGCGTAGCGCCTCACCACCGCCTCAGCCTCAACCCGGACGCCTCAGGCTCCAACTGCTCGCTGTCTCGCTGCCGCTCGCGGGAGAGCTTCCACAGCATGCGTCGCGCCTCCTCTGTAGACGAGATCGAGGCCATGAGGCCCGAATGGGAGCGAAAGAACCGCAGAGCAAGTATCCGACCGGGGAGCAGCAGCACTGgtgcAGTGAACAGTAAGTCCAACATATTGAACTCCACGTCGGACTCTGACCTGATGCGGTACCGCACCATTTCCAAGATCCCTCAGATCACCCTCAACTTTGTGGATTTCAAAGCCGACCCACTCATCGCCCTGCCCACAGGGGACATGGACATCATAGCTCCCTGCAAACTCATCGACCGGACGCACCACGTCACAGAGAAAGTCACCCAGGTGCTGTCTCTGGGTGCCGATGTGTTGCCAGAGTACAAGCTCCAGGCCCCCCGCATCCACAAGTGGACGGTGTTGCACTACAGCCCGTTCAAGGCGGTGTGGGACTGGCTCATCCTGCTGCTGGTCATCTACACCGCCATCCTGACACCCTACTCAGCTGCATTCCTCCTCAACGACCAGGAAGAGGTAGCCAAGCAGAATTGTGGTTACTCCTGCTCGCCTCTCAATGTGGTGGACCTCATAGTGGATATCATGTTCATCATTGACATCCTCATCAACTTCAGGACAACATATGTGAATGCTAATGATGAGGTGGTGAGCCACCCGGTGCGTATCGCCGTCCACTACTTCAAAGGCTGGTTCCTCATCGACATGGTGGCTGCTATTCCCTTTGACCTGCTCATCTACCGCAGCGGAGAGGAGACCACCACTCTTATTGGTCTGCTGAAAACTGCTCGTCTCCTGCGATTGGTGCGTGTAGCCAGGAAGCTGGACCGCTACTCGGAGTACGGCGCAgctgtcctcttcctcctcatgtGCACCTTCGCCCTCATCGCTCACTGGCTGGCCTGCATCTGGTATGCCATTGGTAGCGTCGAGAGGAATGGTTCAATTGGCTGGCTCCACACGCTGGGGGACCAATTGGGAAAGCACTACAACAGCTCCATCCTAGGTTCGGGACCCTCCATCAAAGACAAGTACGTCACAGCTCTGTACTTCACCTTCAGCAGCCTGACCAGTGTGGGATTTGGAAACGTGTCCCCAAACACCAACTCTGAGAAGATCTTCTCCATCTGTGTCATGCTCATAGGATCCCTGATGTACGCCAGCATCTTTGGGAATGTGTCAGCCATCATCCAGCGGCTGTACTCGGGGACGGCCCGCTACCACACCCAGATGCTGAGAGTCAGGGAGTTCATCCGCTTCCACCAGATCCCCAACCCACTCAGGCAGAGGCTGGAGGAGTACTTCCAGCACGCCTGGTCCTACACCAACGGCATCGACATGAATGCTGTGCTGAAGGGTTTCCCAGAGTGTCTACAGGCGGATATCTGCCTCCATCTGAACCGGACGTTGCTGCAGAACTGTAAGGCTTTTAAGGGCTCCACCAAGGGCTGCCTCAGGGCGTTGGCCATGAAGTTCAAGACCACCCACGCACCCCCGGGTGACACGCTGGTCCATGCTGGGGACGTCCTCACTGCCGTCTACTTCATTTCCAGGGGATCCATAGAGATACTAAGAGGAGATGTGGTGGTTGCCATCTTGGGGAAGAATGATATCTTCGGCGAGCCTATCAACCTGTATTCCCGACCAGGTAAATCCAACGCTGATGTGAGGGCTCTAACCTACTGCGACCTCCATAAAATCTTCAGAGAAGATGTTCTGGAGGTGCTGGACATGTATCCTGAGTTCGCAGACCACTTCTGGAACAACCTGGAAATCACCTTCAACCTCCGAGATACCAACATGATCCCAGGCTCTCCGAGCAGTGATGACTCCAACTGTGGGGGATTCAACAAGTTACGCAGACGCAAGTTATCATTCCGAAGACGCACAGAAACAGATGATGCAGATGCTGGTGAAATTAAAAAGTCCCATAAGTCCTCGCGACGAAGACACAGGGAAGCAGCCAACAACCAAAAAAAGGAGGAGGCACCTCAGCGGCAATGGGAGGCACATCGCAGCTCAGTGTCTTCACACTCCAGTGGTGATGAGGGGGAGGAGTCAATTGTGACCAGACTCGCCCCTCCGCCAGCAATGCTGGAGAATCCTCAGGCCATGCCCAGGAACTTCAACAAGAGCACTGAGGGGGACGGAGACCCCAAGACTGGCAACACCTGCAACGCTCTGTCAGGTGCATTCTCTGGTGTGTCCCACATCTTCAGTTTCTGGGGGGAGAGTCGGAGTGGTGGTCAGTACCAGGAGGTTCCCAGCTGCAGTCTTACCTCCCCCCCGCCCCTCAACACGCCGCTGCACAGCCTGAGCCGACATCAACGCAACCAGCTGGACACACGCCTGGACCTGCTGCAGAAACAGCTCAACagGTTGGAGAGTCGCATGTCAACAGACATCGGAGCTATCATGCAGCTGCTGCAGAGACAGATGGCTCTGGTTCCTCCTGCCTACAGCGCCGTCTCCTCACCACCTCAgGTCTCACCCTACCCTGGTCCATGCCCAGGACCAGGTCCAGGAGAGAGACTGGTCCAGCCTGTCACACTACTGGAGACAGACACCCTGGCCTCACTCTCACAGATCTTGGATTCCCAGGACTTTGAGGAGTTCCCAGCCCAGCCTCTTGACTCCCTGCAGCCTCAGGACACCCCACCGATTAACACCAACCAGGGCCAGCTCACTCCGTCTGGACTGGACATCCTGGGGCAGCATCTGGATCTGGGACTGGTCACTGGGGCTGGAGTCATTTCTGGGCCAGCTGTAGGTTCAGGTGTAGGGATAGATTTTGGGAGCGAGGCAGCAGTGGGGTCAGGTTTAGGAGCAGGGTTAGACTTTGGTTCAGGGGTATGTATGGGGGCTGGGGTTGGGCCAGCAACTGGAACAGGTGTGTCTTCCCTGGATCCTGAAACCCAAAGAAGGCTGTCCCTCCAAGAACCACAGACACCTCTGGACTCACggacaccacacagacacagctctGACCCAGGGGGGAGCTAAGGAAGAAGCAAAAGGGGGAGGAGAGTGGGATGGAGGGAgagctacagagagagagaataagtgTGCTGTTTTGTCCTGCAGTCCCTCTTCTTTTTACCGTTCCTCATGGTACCCTTGGAGATCAAGAGGCACCTACTGTACCCACCACCAAAACCCTTGAGGGCACCCAGCTCCTGGATCTTCACCGCTGAATTTTCGCCTCTGAGCTCTTAAGAAAGGACACACAGCTCAGAGAGAGTGAAGCCAGGCCGGTGGGTTAAGGAAAGGGTGGaggcctctctctgtctctctctcccacaaGTCCCGCCCCCGGAGCGTTCTGAACTCCACAACGTTACAACCTTTAACCAAAACCACaaacagagcagagaggagctcTGCCACTTAATGAACACAGTCCAGGTCGACCCCGACTGATCAGGTCTGGACCTCTCAGTCATCTGCTGAAAGAtgacacttcacacacacacacacacacacacacacacacacacacacacacacacacatacatacataaatgacTACTGTTCTCTAGAAGAATCCCTTTACTGCTGTGTCCAGTGTTGGAAGACTGACAACAACAAGACAACAACGGACAGAATAATGACGAAACAAGTAGCCATTTCCGTCTTGCACTGAAACTCCTATTAATATAATgattattctattctatatgtCCGTGGCGCTTCCGATAAACTCACCAACTAGCTGGTAAATTGTAGTGTTAGCTGGCCTAACAGGAAACCTGCTGTCCCGTTCTGTCATTGGTTTcatcccctccccccctctcccaaGAACACACTGGATTGGCTGGTTTGCACCTTGGGGGGTGGGAACTGGAGGGTTAAAAGCCATGAATTTTTCTCTATGAACATATCAGCTACCCTATTATAAACATTGTACAGATTTGCTAGTGAGTAAAGAACACATGGCATGCTTGGGCAGTGTCACAAACAGGTAAACTGGCAAACTTACAAGTTTACCACGACAATAGTGCACCAAAAACAGCCAACTATAAAGAATTAAACAAGCAGGGAACCCCAGTATACTAATTCCATGAGTTGTGACCTTAATGGAGAACTTTGACGATATGATGACACGGTACTGGCTTGCTgtaatttctaaaaaaaatcaaagcacATGCataaaggaaaaaaggttgagtGATTCCAGAATTTGCTACCTCAGATTTCATTGGTCTTTACTTTTTTTCACCTGAGCAGGCACACAGAATGCTTTCACCGTGTACGTACGAGTCCGTCATGTGATCTGTAAAAATACAAGTTTGCCAGTTTACAATGACCAGCCGAATGCGGCATTATTCTACGTCCAGTACAATATGCAAACACTGGCCAGAAGAGATGAGTGAGTGCTTTAATCTTTAATTATAACGTGTAGTAAGTCCAGGTCTAAACCTTTTTACGTGTTTCATGTTTGTCCTCGTTTGCTGAGCATGGCGTACAGTACGTTTGCTTCCACATGTTGTAGAGAATCACTGGATTCTAATGTTTAGgacacatttgttttctttgccCTAAACTGATGTTAGTGGCTTGTAACGACAGATATcgagtgtttgtgttttgaatATAGacatcacaaataaaaaaaaaaaaactttacaatGTAAGTTTTAAAATACTTAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU294268 lncRNA downstream 11946 1750363 ~ 1811097 (-) False LOC120552169
TU294257 lncRNA downstream 11991 1750363 ~ 1811052 (-) False LOC120552169
TU294265 lncRNA downstream 11991 1750363 ~ 1811052 (-) False LOC120552169
TU294267 lncRNA downstream 11991 1750363 ~ 1811052 (-) False LOC120552169
TU294158 lncRNA downstream 467440 1355257 ~ 1355603 (-) False si:dkey-225n22.4
XR_005637969.1 lncRNA upstream 54172 2069365 ~ 2070418 (-) True LOC120552173
TU294289 lncRNA upstream 158107 2173300 ~ 2173556 (-) True G217435
TU294299 lncRNA upstream 194835 2210028 ~ 2210237 (-) True G217445
TU294366 lncRNA upstream 199819 2215012 ~ 2215501 (-) False scospondin
XR_005637952.1 lncRNA upstream 222677 2237870 ~ 2240877 (-) True LOC120552007
XM_039789961.1 mRNA downstream 11913 1658172 ~ 1811130 (-) True LOC120552169
XM_039789605.1 mRNA downstream 286853 1507736 ~ 1536190 (-) True ift74
XM_039789599.1 mRNA downstream 374768 1355488 ~ 1448275 (-) True si:dkey-225n22.4
XM_039789537.1 mRNA downstream 490633 1321438 ~ 1332410 (-) True LOC120551939
XM_039789542.1 mRNA downstream 622833 1198609 ~ 1200210 (-) True LOC120551945
XM_039789616.1 mRNA upstream 199518 2214711 ~ 2419065 (-) True scospondin
XM_039790626.1 mRNA upstream 786373 2801566 ~ 2860283 (-) False zeb1b
XM_039790624.1 mRNA upstream 786373 2801566 ~ 2858387 (-) False zeb1b
XM_039790625.1 mRNA upstream 786373 2801566 ~ 2818938 (-) True zeb1b
XM_039790282.1 mRNA upstream 973733 2988926 ~ 3136214 (-) False svila
unassigned_transcript_1299 other upstream 1294306 3309499 ~ 3309570 (-) True trnag-ucc_41
XR_005638064.1 other upstream 1301255 3316448 ~ 3343705 (-) False LOC120552696
unassigned_transcript_1300 other upstream 1559538 3574731 ~ 3574828 (-) True trnar-ucu_17
unassigned_transcript_1301 other upstream 1559883 3575076 ~ 3575173 (-) True trnar-ucu_18
unassigned_transcript_1302 other upstream 1560569 3575762 ~ 3575859 (-) True trnar-ucu_19

Expression Profile


XM_039789966.1 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_039789966.1 Expression in each Bioproject

Bar chart with 6 bars.
XM_039789966.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.