RNA id: XM_039789990.1


Basic Information

Item Value
RNA id XM_039789990.1
length 3217
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC120552191
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18831587 ~ 18853616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGGACCATATATCATATAACTAGGgaacatgtgtgtatgtatactaCACGGACTGTCTGCTGACTGCTCATCTCTCCGGGCGAGACAATGGGCTGCATTAAGAGCAAAGAGGACAAAGGCCCTACGATGAAGTATCGGCCAGAGAATTCAACAGTGTCGGACCCCAACTCCACCATAACCACACCTCACATAGGTCACTACGGACCGGATCCCACCCAGCTGCAGCAGAACcaacctccctcctcctcctcaggctCTGGGGCTGCAAACTTCAACCACACCCTCACACCGTTTGGCGGCTCGTCTGCCATGACTCCCTTTGGAGGGGCGTCATCCTCCTTCTCCGGTCCTGTGTCCAACTCGTTTTCTGGAGCTGTCTCAAgtgGTGTTACGTTCTTTGTGGCTTTGTATGACTATGAAGCCAGAACATCTGACgatctttcatttaaaaaaggagacCGATTCCAGATCATTAACAATACAGAGGGAGACTGGTGGGAGGCTCGCTCCATCAACACGGGGAGGAATGGCTACATCCCGAGCAATTATGTGGCCCCTGCTGACTCCATCCAGGCTGAAGAGTGGTATTTTGGTAAGATGGGACGCAAAGATGCTGAGAGGTTGCTGCTGAATCCAGGAAACCATCGAGGAACTTTCCTGGTGCGAGAAAGTGAAACTACTAAAGGGGCTTATTCTCTGTCCATACGAGACTGGGATGAAACCAAAGGAGACAATGTGAAACACTACAAGATCCGCAAGCTTGACAGTGGGGGATACTACATCACTACCCGGGCACAGTTTGACACTTTACAGAAGCTTGTCAAACACTACACAGAGCATGCCGACGGGCTTTGCCACAGGCTGACCACAGTTTGCCCCACAGTCAAGCCTCAGACTCAGGGGCTTGCTAAAGATGCCTGGGAGATCCCCCGGGAATCCTTGCGACTGGAGCTAAAACTGGGCCAGGGCTGCTTTGGAGAGGTCTGGATGGGCACGTGGAACGGCACCACTAAGGTGGCCATAAAGACGCTGAAGCCGGGCACCATGTCGCCTGAGGCCTTCCTCCAAGAGGCTCAGATCATGAAGAAGCTCAGGCACGACAAACTGGTGCCTCTTTATGCTGTGGTGTCTGAAGAGCCCATTTATATCGTCACAGAGTACATGGCCAAAGGAAGCTTGCTCGACTTCATCAAAGAGGGTGACGGAAAATTCCTGAAGCTTCCCTTGTTGGTAGACATGGCTGCACAGATCGCTGACGGCATGGCCTTCATCGAGAGGATGAACTACATCCACAGGGACCTGCGCGCCGCCAACATTCTCGTGGCCGACAACCTGGTGTGCAAGATCGCAGACTTTGGTCTGGCCAGGTTGATAGAGGACAATGAGTACACGGCGAGGCAAGGAGCCAAATTCCCAATTAAATGGACGGCCCCAGAGGCTGCCCTGTACGGCCGCTTCACCATCAAATCAGACGTCTGGTCCTTTGGGATCTTACTCACCGAGCTTGTCACCAAAGGCAGAGTGCCCTACCCAGGCATGGTGAACCGCGAGGTACTGGAGCAGGTGGAGCGAGGCTACCGCATGCCCTGCCCCCAGGGGTGCCCCGAGTCCCTGCACGAGATGATGAAGCTCTGCTGGAAGAAGGACCCGGATGAGAGGCCCACTTTCGAGTACCTCCAGTCCTTCCTGGAGGACTATTTCACTGCCACAGAGCCACAGTACCAACCTGGAGAGAACCTATAGCCTGCCTGGCCTCTGCTGCGTATCCCTACACCTGGGAGCACACTACGTAGCCATAAGCTCTCATTCGACTCTGTAAAAAGTCGACTGGAGGCTAACCAGTCGCATAAACCACTACTAACTACCCATTcttgatttagattttttgctTTCAGTGTCCGCCATCATTTCATTttactttcatatttttttgttttcattcatgGTACTACGCAAGTCTTAGCTGTGTgaaatgtttgattttttttatgtgtattttatCACCATGTACAATAATGACtgtggttgaaagaaacaaATGCATTTCAGTTATATTTTAAATACACTACATTCTCATGAACACAGTATATTGCTGTAAAAATAAGCTGTGATAATGCCTCACAATAGAAAAACCTATTGTTGTGAACGGCGTTCCAACTGTTGggttttatgtggtttaataGGGAGCGCTCACACTCTATTTGTCTCCAAATTATATTCTTTTGTGATAAATTGGTAAATTATGCATCAAAACCATGAATAATTAACAGAGATAATATATTAAACTAATAGGGAAAAGCTCTCAGGGGACTGATGATCATCACCACAGTCCATTTCACAGTGATTATTTAAAAGTAAATTCCACACAGCTTAACTTTAGTTACATTTCATCAGCTACAGTGCAATGTCTTATACTTGTTACAAATGGGTGACTAGAGTGCAACTGTGACATGGTCTTTTATGCCTTTTGTAATATTTAACAAtgcattttgtttgtcttttgataTTAATTTCTTCTGTTCCTTTGTTATTACAAGACTATATCATATTTTATTCATATCACATGGACATGGTTTTATAGCTTCATTTGAAGACTTGAAGACCCAACTGTCCATGATCATCCAGAAATCTCTGCTAGGACTTTTTATAACAATGCCATAACTTTTTCTGTCCCGCCATGCCGGGGTTGTATAATCTCACTGCAATCACTACAGAGACATGCTTACATAAAAACTGTTCACAGTGTTATTGAGTTAAATAGTGATGAAACTCGTGGACTCATGGAAGCCAGAATCATGACACTTAACGGATACTCTTTCTAAAAGTGGAAAGTATGAACAAAGCCACCAAATAATTTGGAAAAAACATGTTATCTTCTACAATGTGACTAACTGAAGCACTTGGGACTCTTTCATGTTCATGTATCTAAGGTCTACAGCTCTACAGAAACTATTTGTAtagcaatgtgttttttttacagtaattttATCTTTGCATTTTTGCTCCTGTATGGGCTCATTGGGACAGTATTATGATGGGAATGATGGGAACACTATTTGACGACTGGGCTTGTTATAAAGGGCTTTGTATATTATAAAATCATCATTTTATAAGATTATTAATAAATTGGACAAGattgaaaaatatatttggGAGGGAGAAAGTGGGCGAAGACTCATCTGAGGAATTTGTACAATAAAGACGTGATTTTAA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298921 lncRNA downstream 1602 18829751 ~ 18829985 (-) True G220893
TU298915 lncRNA downstream 15209 18815906 ~ 18816378 (-) True G220888
TU298903 lncRNA downstream 58090 18772981 ~ 18773497 (-) False LOC120552352
TU298879 lncRNA downstream 90971 18740417 ~ 18740616 (-) True G220860
TU298828 lncRNA downstream 208202 18622691 ~ 18623385 (-) True G220839
TU299030 lncRNA upstream 193019 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA upstream 193019 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA upstream 193019 19040265 ~ 19043216 (-) False G220972
XR_005637963.1 lncRNA upstream 469408 19316654 ~ 19317227 (-) True LOC120552156
TU299179 lncRNA upstream 525345 19372591 ~ 19374516 (-) True G221086
XM_039789988.1 mRNA downstream 4705 18821982 ~ 18826882 (-) True enosf1
XM_039790345.1 mRNA downstream 20643 18772977 ~ 18810944 (-) True LOC120552352
XM_039789520.1 mRNA downstream 68741 18756353 ~ 18762846 (-) True LOC120551921
XM_039789521.1 mRNA downstream 68939 18756353 ~ 18762648 (-) False LOC120551921
XM_039789519.1 mRNA downstream 76987 18741999 ~ 18754600 (-) True mrc1a
XM_039790256.1 mRNA upstream 91667 18938913 ~ 18949495 (-) True mettl4
XM_039790253.1 mRNA upstream 141935 18989181 ~ 19005165 (-) True LOC120552316
XM_039790254.1 mRNA upstream 141935 18989181 ~ 19000838 (-) False LOC120552316
XM_039790252.1 mRNA upstream 141935 18989181 ~ 19000344 (-) False LOC120552316
XM_039790246.1 mRNA upstream 159397 19006643 ~ 19036833 (-) False myom1b
TU298817 other downstream 200112 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 206789 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 1956287 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 2036463 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2546852 16266303 ~ 16284735 (-) False drd3
TU298948 other upstream 91753 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 468345 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 1989051 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 3142771 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3355537 22202783 ~ 22218366 (-) False smpx

Expression Profile