RNA id: XM_039790017.1


Basic Information

Item Value
RNA id XM_039790017.1
length 3186
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC120552199
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21303789 ~ 21312913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATATTGTAGTCCATTTGACCTCGGATGCCGGAGAATCCATTTGCTGTTATTTAGCTAAGCTGCTGAAAGTTGTGTAACAACAAGGGAAACAAAAAGGACACCGCTCCCGGGAGGACTCGTTCGTTTGAGTTACATAGAGGGTCTCTCCTCACACATCAACCCCCCCAACTCCTGATTTTGAGTTATCATTGGGCAAAAATGTTTTCACTGTCAACGTGTTTTCAGCCACAGCAGATGATAGTGCCCCTCAGCCAGCTCATCAATGCCCTCCACTCTCTGAAGAACTCAGCCACAGCTTCAGTCCAGGCCCTGCACAAAGATTTCATTCCAGAGCACAGTTCATATCTAAGAGAGCCCAGTGTGAGTCTGAGGGACCTCGGCCTGTCGGAGATCAGGGCGAGTCAGCTGGATGAGCTGGTCAGCAGGTTACTGCCTATCCCCGGGCCAGAAGAGCCTCCCGCTGTTCCTTCCATATGGAGGTCGAGTCACGTTTCTTCAGACAGCTTCTTTCACAACAAGCATGGGTTTTCACACAGAAGGTTGGGTGTTTTTGGCTCCCCAATATTCCACAGACAATACCACAGTCCTCTAAAAGAAGCTTGCTCAGAGCTGCAATTCTTACCCGTATGGATCCAGAGTCGGGGTTTCAAGACACTTAAATCAAGGACCAGACGGACAGAGTCTGGTTATGACGGTCCGGTAGAGTCCGAGGCCTACACACCAGCCTTCATGAAGGGATTGCTTCAGAGGGAAAAGGCACCAGAAGCCCAATCACTGGACGAGCTGCTGAAACAAAAGCACCTTCCAGATAACCAGCAGGAGGCTTTCAAGACGGGGTTCACCGAGGGGTTCATGAGGTCTCAGGCCTTCACTCAGAGAACACAAGCCTCGCTGAGGAGAACCAGGATTATCCTGTTGGCTCTCCTACTTCTTGGTATTTATGGCTTGTCAAGAACCCCGTTTCTCTCGGGTAAAGGCTCCTTTTCTGATGCTGTGAGGTTCCGCACCACATCTGGTCTTGACTCAGCAGTCGACCCCATCCAGATGAAGAATGTGACATTTGAGCACGTCAAAGGAGCAGAGGAGGCGAAGAATGAATTACAAGATGTTGTGGATTTTCTCAAGAACCCCGAGAAATTTACTGTTCTGGGCGGAAAGCTGCCTAAAGGGATCCTCCTTGTTGGTCCACCAGGCACAGGAAAGACTCTGTTAGCACGGGCTGTGGCTGGGGAGGCTGATGTGCCTTTCTACTACGCCTCCGGATCAGAGTTTGATGAGATGTTCGTGGGCGTTGGTGCGAGTCGAATCAGGAACCTTTTCAAAGAGGCAAAAGCGAATGCTCCTTGTGTTATCTTCATTGATGAGCTGGACAGCGTTGGCGGAAAGAGGATCGAGTCTCCAATGCATCCCTATTCTAGGCAAACCAtcaaccagctgctggctgaaATGGATGGGTTTAAACCAAACGAGGGCGTCATCGTTATTGGTGCTACAAACTTTGCAGAGGCTTTGGACACCGCTCTGGTGAGGCCAGGAAGGTTTGACATGCAGGTGACGGTCCCTCGTCCCGATGTGAAAGGACGCACTGAAATTCTCAACTGGTACCTCTCGAAGATCAAAATGGACCCTGCTGTGGAAGCGGAGATTATTGCCCGGGGCACGGTGGGCTTCACTGGGGCAGAGCTGGAGAACCTGGTCAACCAGGCGGCCCTGAAGGCAGCCATGGACGAGAAAGAGATGGTCACAATGAAGGATCTGGAGTTCGCTAAGGACAAGATCCTCAtggGCCCTGAGAGGAAGAGTGTTGATATCGACAAGAAGAATAAGACCATCACAGCCTACCATGAGTCCGGCCATGCTATTGTTGCCTATTACACCAAAGATGCAATGCCCATCAATAAGGCCACCATCATGCCTAGAGGTCCAACTCTTGGCCACGTGTCCATGCTCCCAGAGAATGACCGTTGGAGTGAGACCAGAGCCCAGCTGCTGGCTCAGATGGATGTCAGTATGGGCGGCCGAGTAGCAGAGGAGCTCATCTTTGGAGATGATAACATCACCACTGGAGCCTCCAGTGACTTCGATGGAGCAACCAAAATAGCAAAAATGATGGTGACCAGGTTCGGCATGAGTGACAAGCTTGGTGTCATGACCTACGGCGACGTGACCAAGCAGAGCCCCGAGACACAGGCTGCCATCGAGCAGGAAGTCAGGGTTCTACTGAAGGACTCATACGAACGTGCTAAAAACATCCTGAAGACGTACAACAAGGAGCACAAGAAGCTAGCTGATGCCCTGCTCGCATATGAAACTCTGAATGCCAAGGAGATCCAGATGGTGCTGGAGGGCAAATCATTGGACCAGCAGATACCTCAGTAGATATTTTTGACTCTTGTATCATGTATATATATGAAGCTGTGCACAGGGCTTTTGGAGGCCTTGTATTTCATTTGTTAGTAACCATCTTATTATCGATGTGAAGATTAAAGGATTAAGTTTCACCCCTTATAaaccttttattattattttaatttgtcttGCATTTCCTGTAGCAaagacttttggtttcacagtGATTTTAAAAGCACCCAGTTTAATtggataaaaaaatacatatttggtCTCCAGAAGTCTGCTACAGTCAAAGATGTTTGAGGTGTCATGAGGGGCTTCCTGTGCTCTACTCTCAAGACAAATGACATCTATAGAActttttgattcatcagtcatATTTGGTATCATAACAAGgttatactgtaaatgtattaaGGTGAGATGAATGATTTCCCATATGTCTATGtctcattttaaatgtgtacagaCCGGTGAACACCATAGAACCTTAAAATACCTCAATCTAGAATGTACCATCTGGCTGTAGCAAAGTACAGGTGataccactgctcattttagaGTTTTTTTCTCTAAATTATATATTTCAGTTGCatctattttgtttatttatttaagtgcCCAAAGGTGTGTTCTTTTTCTGAAATTAGTGATCCTCACGCCCTATTCTAAGCCCACGTGTAGCTGATAAATGAGGggaaatgtatgtatatacacacacacacacacacacacacactataaacgTGTAAAAGGATTGGCTTTGTGCTTCAGTTTGTTCTTTGAGACAAAGACCTTGGAGCTCAAATAAAGGTTATCCTTGCTCATGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299807 lncRNA downstream 1742 21301484 ~ 21302047 (-) True G221567
TU299789 lncRNA downstream 33380 21269442 ~ 21270409 (-) True G221551
TU299788 lncRNA downstream 34686 21268900 ~ 21269103 (-) True G221550
TU299782 lncRNA downstream 39732 21258849 ~ 21264057 (-) True G221544
TU299767 lncRNA downstream 72168 21227053 ~ 21231621 (-) False G221537
TU299823 lncRNA upstream 6977 21319890 ~ 21320410 (-) True G221582
TU299861 lncRNA upstream 32785 21345698 ~ 21372691 (-) False G221604
TU299860 lncRNA upstream 51888 21364801 ~ 21372691 (-) True G221604
TU299875 lncRNA upstream 103038 21415951 ~ 21418007 (-) True G221616
TU299960 lncRNA upstream 418374 21731287 ~ 21731487 (-) True G221695
XM_039790938.1 mRNA downstream 3295 21292784 ~ 21300494 (-) True pks1
XM_039790669.1 mRNA downstream 82122 21217680 ~ 21221667 (-) False rbis
XM_039790668.1 mRNA downstream 82897 21217680 ~ 21220892 (-) True rbis
XM_039790187.1 mRNA downstream 431537 20864843 ~ 20872252 (-) False zgc:111976
XM_039790029.1 mRNA upstream 8387 21321300 ~ 21329803 (-) False acbd5a
XM_039790028.1 mRNA upstream 8387 21321300 ~ 21329803 (-) True acbd5a
XM_039790034.1 mRNA upstream 73727 21386640 ~ 21393616 (-) True pdss1
XM_039790035.1 mRNA upstream 73727 21386640 ~ 21393565 (-) False pdss1
XM_039790964.1 mRNA upstream 100219 21413132 ~ 21442576 (-) True LOC120552736
TU299660 other downstream 441124 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 1976895 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2354308 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2672314 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 677104 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 889870 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 889870 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3650532 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3743680 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile