RNA id: XM_039790028.1


Basic Information

Item Value
RNA id XM_039790028.1
length 3115
RNA type mRNA
GC content 0.46
exon number 14
gene id acbd5a
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21321300 ~ 21329803 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcccaggGTACACCTCCGCCTGGCTCCATTACGCTGTTCATGGCTGGTCGAAGGCTGAGGAGACAGGTCGCCTTCTGACAAACAGATAGGCCGTTGACTTTAACGGTTTTGTGTTGACTGTCTCAGTGGGACACGATGGAGGTGGAGAGTGTCAAAGTGGAAGATGAGAGCCGGTTGACCCTGCTGAGGTTCGAGGCTGCCGTCAAAGTGATCAAGAGTTTAGCCCCAGATGGTCCCTTTCAGCCCTCCAATGACATGATGCTCAAGTTCTACAGTTTCTATAAACAAGCCACTGTGGGAACGTGCAATATACCCCGACCTGGCTTCTGGGATGCAGTTGGCAAAGCCAAATGGGATGCATGGAGTTCTCTGGGAGATATGCCAAAAGAAGAAGCAATGGCAGCCTATGTTGACGAAATTAAGCTGATTCTGGAGGGCATGCCCGTGACAGACGAGGTGGAGGAGCTCTTGCGCGTCCTCGGCCCGTTCTACGAGCTGATTGATGAGAAGAAAAAGATCACACAGATATCCGACCTGAGCACAGCCCGTTTGACACAGTTTGCTAGGCAACTGGAAGGGTTTGGTTCAGTGTTGAATTCAATGCAATCAAAGAGCGTCGCGAAGAGCATCGTCAGAACGATGGAAATGAACGGCACTCTGGAGACTCGTCCGGCCAGGCTCAAATCAAAGCAAGTgaatgaaaagtcagaggaagCAACAcaagatgaggaggaagaggaagaggaagaggaagaagaagacgacAAAGAGCAAGAAGTGGTGATACGGGACGTCAAAAAAGacaAGAAATCAGCAGCTTCACAGCCAAAGAAGAAGGGTTCAGCCAGGAGACGCAAAGCGCCCATATCGAACGGCAAAGTGGCCAACGGGGTCACCCATCTGACCAATGGGAGTCATTCCAGGGCTGCCCTGAACAGTGACAGCTCTCAGGAGGGTTCAGTCGGCCAGCCTCTGCTCAACGGCCACCACACAGATCCCAGTAAAGATGTGTCTGGTCCCAGCCACCTGGCCAGTGACTCGGACAGTGAAGTCTACTGCGACTCTGTGGACCAGTTTGGCCAGGAAGAGAACTCGGAGCATAACCACTCTTTCGACGACCTGGATGAAGATGAGAACCACGTCCTGCCGCCTCTAGAGGAGCCCCAGGCAGCACAGGAGCGCCAGGAGGAGGTTCACGGTGCGGTGCAGGGCATCAGGTGTGGAGGAGAAGACGGAGAGAGCGGTGGAGCAATGTCGCAGAGGCCGAATGCAGCCATGTCAGACAGCTCTATGGTCAGAAGAGAACGGGGCACCAGGTCTCCAGGCCACGGTTCGGAATCTCTGATGCCCCCGTACGGCGGTGGAGACGGGGACGGGGACCACTGGGGGAGAGCAGGAACACCCGGAGGCAGCCTGAATGAGCAGATAGTCGTGGTGTTAGCTAGACTACAGGAGGACATGCAGAGTGTTCTGGAGAGGCTTCACACCCTGGAGGCCCTGACTGCTAGCCAGGCAAAATCAATGTCTCCGTCTCCAACCTATGGATCAACCTTGGTGAAAAAGAGGAGTCGGAAACCATCCTGGTGGCCTTTTGACATTTCCCCGACCAGTTTGGCCTTTGCTGTCATATGGCCATTTGTGGTACAGTGGCTTATTCGCCTATAcctgcagaggaggagaagACGAATCAACTGAACCTGCTCTCCCCCCAAACACCCATGGACACGGACGATAAAGGAGTCCTCGTCTAAATGTCTCTGGTTGCTAATGGCTGTAACTCCCCCCCTGCTTAGACCCACAGCCCAGTAATTTGCTTTTGCACTATGAAGAAGGCACCTAGAGTAATGAGTGAGAGCAAGATATCTCTCAAGTGTGTTGTACTGTGGATGACGAATCATATAGAACCGTGAACGTATGGGCTCGCAGTCGGTGATTAATATAAGCTTTTCAAGATGATGCCACTATACTggaatttttgtttttctctgtatGGTTTGTGTTGAGAGGGGGAACTTACAGATATGATGTTGTCAGCCTGTTTATAAACCAACCACAGCAGCTTGTCAATTATTTCCATAACTAAGGCTGTGTTGCACATAAAATGGCCCAAAACTTTGTTGTTTTTGGCATAACGCTTGATGTGGttatacattttaacaattttttgttgtttgttttcattagTTGCCCAGGAAATGCTGCTATAATAACAAAATGTTGTAATAACTGTAGTTTTAGAAGGGAGGATTGAATGTCAAAGTGTATTGATATGTGAGATTTCGTTTAAATTCAGagaataaattaatatttattgCTTCTAGCGAGTTATAATGAAGACATTGCTGGGCTGATCTCAGATCTATAAATGAGGTAAAAGTTCAAAGTAGCCGCTAAATGTTGTGTATCGGTTAGACAAAGTtatcaaaaatgttttcatcagCTGTCCTGCATATCAGACTGTGCTTTGTGTCAAAGTGGTCTCCAcatcaaattgttttttttccaaatagaAGAGGTGCCTCAACATCATAAGGTGCATTTATAATGTAGATGCGGGTTATTCTTACATTCACATATTGTAGCATAAGTGTTCCAGTGGTGGACCAAATTAACATTCATCACACTACCTACATAGTGAGCCAAGAGGTGGTGAGAATATCTCATGGCCTCAGTGCCCACTCAGCTGTCTGATTAGTACATAACACTTGTCACTGTCCTTTGTTGTTTACGCTgtcaagtttttttattttgtctaatTTTAATGTGATGTTTGTATGAATGTGGTGGAAAGATTTTGTGTGAGCAATGGTAATCATGAATTGTTTTCAGAGCAGTGAGATCTATGTAAATTGTATACAATAGCTGTACAGTTCAGATTAAAATGCAGTATTTTAATTGCATTCccatgtattattaatatagaaTACTATATCATTTACAAAGGTTTGCATCTGCAATAGCACTAATCTTTCCAGAGGCACtatgtttaataaaaaataaagtagttTACCTTTCTACTGAAATGTGCTAAGGCTTTCTCACCCTCTCTGCCTGTGGACAGAGGGGTGTTTGCATGTAATAATCCAAGCCTAAAATAAAAGTTTTCATAAAGCA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0000062 fatty-acyl-CoA binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299823 lncRNA downstream 890 21319890 ~ 21320410 (-) True G221582
TU299807 lncRNA downstream 19253 21301484 ~ 21302047 (-) True G221567
TU299789 lncRNA downstream 50891 21269442 ~ 21270409 (-) True G221551
TU299788 lncRNA downstream 52197 21268900 ~ 21269103 (-) True G221550
TU299782 lncRNA downstream 57243 21258849 ~ 21264057 (-) True G221544
TU299861 lncRNA upstream 15895 21345698 ~ 21372691 (-) False G221604
TU299860 lncRNA upstream 34998 21364801 ~ 21372691 (-) True G221604
TU299875 lncRNA upstream 86148 21415951 ~ 21418007 (-) True G221616
TU299960 lncRNA upstream 401484 21731287 ~ 21731487 (-) True G221695
TU299984 lncRNA upstream 484693 21814496 ~ 21815723 (-) True G221708
XM_039790018.1 mRNA downstream 8387 21303789 ~ 21312913 (-) False LOC120552199
XM_039790017.1 mRNA downstream 8387 21303789 ~ 21312913 (-) True LOC120552199
XM_039790938.1 mRNA downstream 20806 21292784 ~ 21300494 (-) True pks1
XM_039790669.1 mRNA downstream 99633 21217680 ~ 21221667 (-) False rbis
XM_039790034.1 mRNA upstream 56837 21386640 ~ 21393616 (-) True pdss1
XM_039790035.1 mRNA upstream 56837 21386640 ~ 21393565 (-) False pdss1
XM_039790964.1 mRNA upstream 83329 21413132 ~ 21442576 (-) True LOC120552736
XM_039789436.1 mRNA upstream 134296 21464099 ~ 21484174 (-) True gad2
XM_039789428.1 mRNA upstream 155419 21485222 ~ 21545051 (-) False myo3a
TU299660 other downstream 458635 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 1994406 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2371819 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2689825 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 660214 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 872980 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 872980 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3633642 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3726790 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile