RNA id: XM_039790035.1


Basic Information

Item Value
RNA id XM_039790035.1
length 2096
RNA type mRNA
GC content 0.48
exon number 10
gene id pdss1
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21386640 ~ 21393616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGAAGGTGGAGCGCAAACTGTACGAGCACGAGTTTGTTTGAAACCTTGTGGCATTGTAACGGCAGAGCTGCGTTCCCTGCGTCCTGTCTGGGGCAGAGATCCTGGAGCTCCGGGCCGGGGAATGAGACACAAGTCACGGTTGCTGAATCCCACACTACAGCCTCGCTGTTGCAGAAAGACTGTACACAGTGATGCGAAGCTGAAGGACCCCTTCACATTAGCCCAGAAAGATTTAACTAATTTATATGATGACATCAGAAAGGAGCTATTTGTATCCAAAGAAGAGCTGAAGTCTCTATGTGACTACTACTTTGATGGAAAGGGCAAGGCCATCCGACCGTTGATAGTTGTCTTGATGGCCCGGGCACTCAACATCCACAGCAACAGAGCCGGAGATTTGATCCCAGGGCAGAGGCACGTAGCTATGATCACCGAAATGATCCACACTGCCAGCCTGGTGCATGACGACGTTATAGACGGATCAGATAAACGAAGAGGAAAGAGCACCATCAATGAAGTGTGGggtgaaaaaaaaGCCATCTTGGCTGGAGATTTCATCCTCTCAGTTGCCTCCATGGCCATGGCTCGTATTGGTAACAACACCGTGGTAAAAGTGTTCGCCCAGGTGATTGAGGATCTGGTACGAGGTGAATTTATGCAGCTGGGCTCGAAAGAGAACGAGAACGAGAGATTCAAACACTACCTTGAGAAAACTTTTAAGAAGACAGCGAGTCTTATTGCAAACAGTTGTAAAGCAGTATCCGTTCTGGTAAATTCTGATCCTGAAGTTCATGAAATAGCCTACCAGTATGGTAGGAATGTTGGCATTGCATTTCAGCTGGTGGATGATGTCTTGGACTTCACCTCAGGAACCAATCACCTGGGGAAGCCCTCGGCTGCAGATCTCAAACTGGGCTTGGCCACTGGACCGGTCCTGTTTGCTTGTCAACAATTTCCTGAGCTCCATTCAATGATCATGAGGCGTTTCAGCTTAAAAGGAGACATAGAACGAGCCTGGCAGTTCGTCTTTCAGAGCGATGGCGTGCAACAGACCGAATACTTGGCCAAGCGCTACGGTCAGGAGGCCGTGAGGCAGATCAGTAGGCTCAGGCCGTCGGCAGAGAGAGACGCCCTCATCAGTCTTACCGAGATGGTGCTCACCAGAGACAAGTGAACCTCCACTGCTGGGCTCCACTGCTGGGCTTCACTTCAGGCAGCTACCTGTGGAAAAGAACTCACCCTGCCGCCCCGTGTTTGCACATACCAGGGTCGGACAGCAACTACGAGAGAAGAGATGGGAATTGGGTTCGGAAGGACCTCTGGTGCTGGTTTTAGCGCCAACTCTAAATGAACACTTAATTACTATCAAGTGAGCAAAACCGCACTGaggggtctctctctctgctaaacaattatacaatacataaatacactTGGTTTTTTAGTGCTAATCCTTTGATTCAGATTTCCTGAATGTTACCAACAGCGATGATTGGAAAAGGAAATATTATAAGCTTAAATGATTGGGTGACGCTGAAAACAGCAATCCAACTCAGCTTCATTCAGTACTGTAACTGCAACATCCTCCCAGTGCTTGACACTAGCCAACTTTGACAGAAAGTTTGTGACGCGGTGGCGTCGAGCCGTGGCGGCATGATTGCAAAATCTGTGTAATTCCAAACGCAATGGAAGTGAAACGGTGTCATTGGTGTGTAAGTTTGGATCTGTTATCGTTAATCAAGATCCGTCCACACCTCAGAGGCCAAATAGTTATGTCTTTTCAACTTGTGAAATGTTATTTAATGCAAAGTGTCCTGTAACAACTAAAGGCcccgacacaccaacccgacggctgactgtcggcagaaaaggcagtctgactgatcagtcggctccccgaggtccaaaaagtgcttCGGAACACACCGACGCAACGCCGACTTGAGAAtatacgttctgcgcgtgcgcgagacgtaatacaaaaaaatttaaactggAAATGACCAACGCGGAACGttggtctggcttctccagctgacagataatggcggcttgttcgaaatccgatctcgtattttacgaaaatagttgac

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299861 lncRNA downstream 13949 21345698 ~ 21372691 (-) False G221604
TU299860 lncRNA downstream 13949 21364801 ~ 21372691 (-) True G221604
TU299823 lncRNA downstream 66230 21319890 ~ 21320410 (-) True G221582
TU299807 lncRNA downstream 84593 21301484 ~ 21302047 (-) True G221567
TU299789 lncRNA downstream 116231 21269442 ~ 21270409 (-) True G221551
TU299875 lncRNA upstream 22386 21415951 ~ 21418007 (-) True G221616
TU299960 lncRNA upstream 337722 21731287 ~ 21731487 (-) True G221695
TU299984 lncRNA upstream 420931 21814496 ~ 21815723 (-) True G221708
TU299991 lncRNA upstream 438591 21832156 ~ 21832884 (-) True G221712
TU300069 lncRNA upstream 550805 21944370 ~ 21944690 (-) True G221768
XM_039790029.1 mRNA downstream 56837 21321300 ~ 21329803 (-) False acbd5a
XM_039790028.1 mRNA downstream 56837 21321300 ~ 21329803 (-) True acbd5a
XM_039790018.1 mRNA downstream 73727 21303789 ~ 21312913 (-) False LOC120552199
XM_039790017.1 mRNA downstream 73727 21303789 ~ 21312913 (-) True LOC120552199
XM_039790938.1 mRNA downstream 86146 21292784 ~ 21300494 (-) True pks1
XM_039790964.1 mRNA upstream 19567 21413132 ~ 21442576 (-) True LOC120552736
XM_039789436.1 mRNA upstream 70534 21464099 ~ 21484174 (-) True gad2
XM_039789428.1 mRNA upstream 91657 21485222 ~ 21545051 (-) False myo3a
XM_039789425.1 mRNA upstream 91657 21485222 ~ 21545051 (-) False myo3a
XM_039789426.1 mRNA upstream 91657 21485222 ~ 21545051 (-) False myo3a
TU299660 other downstream 523975 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2059746 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2437159 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2755165 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 596452 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 809218 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 809218 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3569880 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3663028 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile